Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2847 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCATCTGCCACCAGGCTTCAGGTTCCATCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCAACTTCACTGGTAGAGCCATAGCTGAAGTAGACCTTAACAAAAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAAATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACCGAAGCTGGTTACTGGAAAGCCACTGGGAAGGATAGAGAGATTTACAGCTCCAAGACTTGTTCTTTGGTCGGGATGAAGAAAACCTTGGTTTTCTACCGCGGTAGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTATCGGTTGGAAGGCAAATTTGCTTACCATTACCTTTCTCGCAACTCCAAGGACGAGTGGGTCATATCTCGCGTGTTCCAAAAGAGCAACACAACCAACGGAGGCTCAGTTATGTCTGCTTCAAGTGGCTCCAAGAAAACGAGAATGAACACCACCAACAGCACTCTCTGCCCAGAACCAAGTTCACCCTCTTCGGTTTACCTTCCGCCTCTTCTGGACTCTTCTCCCTACACAACAACCCCAGTAAACTTCACTGACCGTAACAACTGTTCCTACGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATTGCTGCAGCCACCGCTGCTGTTGTCTCCCCCAACAACTTCACCAATGCAAGCTTCGACCTTCCACCATCTCAGCCTCTGGGAACGGATCCCTTCGCTAGGTTTCAGAGAAACGTAGGTCTCTCCGCCTTCCCAAGTTTGAGGTCGCTGCAAGACAACCTCCAGTTACCGTTCTTTTTTCCTCCGGCAGCACAGCCCTTGGGCGGTGCCTCCCGTGATCTACTCTGGTCGATGCCGGAGGAGCAAAGGCTGGTGGATGCCGCCCCCAACATTCCACTGGGTGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1050 0.5114 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSNFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSVMSASSGSKKTRMNTTNSTLCPEPSSPSSVYLPPLLDSSPYTTTPVNFTDRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFTNASFDLPPSQPLGTDPFARFQRNVGLSAFPSLRSLQDNLQLPFFFPPAAQPLGGASRDLLWSMPEEQRLVDAAPNIPLGVSELDCMWGY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2847 349 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Vra5g2847 349 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Vra5g2847 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 320 - -
Vra5g2847 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 6 320 - -
Vra5g2847 349 MobiDBLite consensus disorder prediction 172 202 - -
Vra5g2847 349 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Vra5g2847 349 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2847 Vra-Chr5 36474822 36477669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2847 1 349 NAC Transcription Factor Family AT5G53950 52.727 9.24e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2847 NAM 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2847 - - gmx:100805987 573.163