LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g2846	ATGAAGCGTTCGCGCATAGGCAATGGCGATGGCGACGGCGACGCCGTGGGAGGTGGGAACAATAAAGCAAGTGAGCAACTAGAACCCCACCACTCTCATGGTCACACGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGCTCCGCTGCAGACGGCCGCGAAGACTTCGACGAAGCCGCGACAGACGGCAAAACGTTCGATGACCTCGGCCTGGCGGATTGGGTGGTTGGTACATGCCGGGAGCTCGGAATGCGGATGCCACGGCACGTGCAACAGCGTTGCATACCGCCTGTGCTAGAGGGCCGGCACGTGCTTGGCATTGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCGATCCTGCATCGACTCGCTGAGCACCCCTTCGGGGTTTTCGCACTCGTAGTGACGCCCACGCGCGAACTTGCGTTCCAGCTCGCGGAGCAGTTCCGTGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTAGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCATGTCTTGCTCCGTGATAACCCTGATATTTCTCCTGTTTTCTCCAGAACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCAACAACTACAAGTAATCTACAAAAGTTGCGAGAACGTTACCAAGACAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATTCGGTCTGCCATCGTTTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCCTTCAAATCACAAACTCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGGGGATTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGAACAGCAAGAGCCGGTAGAGGTGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCACTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAACCAGAAACTGAAAATGCTTGCAGAGAAAGGACTGTTGAAGAAAAATAAAAGGAGAAAAAAAAGTAAAGAATTTTCAGAGCAAGGGAAAGAGGTTTTCATGAAGATGGGTACTGATAGCATTGAAAGGGAAACAAAAACTAAAAGTGCTAAAAGAAAAAGGTTTGTTAATGAAAAAAAGTAA	1602	0.4594	MKRSRIGNGDGDGDAVGGGNNKASEQLEPHHSHGHTLPVPQTQESHQRSAADGREDFDEAATDGKTFDDLGLADWVVGTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKNQKLKMLAEKGLLKKNKRRKKSKEFSEQGKEVFMKMGTDSIERETKTKSAKRKRFVNEKK*	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g2846	533	MobiDBLite	consensus disorder prediction	1	62	-	-
	Vra5g2846	533	SMART	helicmild6	323	404	IPR001650	-
	Vra5g2846	533	Pfam	DEAD/DEAH box helicase	90	258	IPR011545	GO:0003676\|GO:0005524
	Vra5g2846	533	PANTHER	ATP-DEPENDENT RNA HELICASE DDX49-RELATED	65	496	-	-
	Vra5g2846	533	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	280	443	IPR001650	-
	Vra5g2846	533	SMART	ultradead3	84	284	IPR014001	-
	Vra5g2846	533	Pfam	Helicase conserved C-terminal domain	308	404	IPR001650	-
	Vra5g2846	533	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	133	424	IPR027417	-
	Vra5g2846	533	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	215	223	IPR000629	-
	Vra5g2846	533	MobiDBLite	consensus disorder prediction	48	62	-	-
	Vra5g2846	533	CDD	DEADc_DDX49	67	270	-	-
	Vra5g2846	533	Gene3D	-	35	269	IPR027417	-
	Vra5g2846	533	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	96	269	IPR014001	-
	Vra5g2846	533	Coils	Coil	530	533	-	-
	Vra5g2846	533	CDD	SF2_C_DEAD	281	413	-	-
	Vra5g2846	533	Gene3D	-	275	451	IPR027417	-
	Vra5g2846	533	MobiDBLite	consensus disorder prediction	509	533	-	-
	Vra5g2846	533	PANTHER	RNA HELICASE	65	496	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g2846	Vra-Chr5	36431180	36438397	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g2846	52	417	Eukaryotic Initiation Factors Gene Family	AT3G13920	32.153	3.00e-54	187

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g2846	K14778		-	gmx:100798597	766.533