Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2845 ATGGCTCCTAGGGATAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAACACAGGCCCACAAAGAGATCCGCTACAGGGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCACGAGCCTACGACGCCGCCGCTCGCGAGTTCCGAGGCGCCAAGGCCAAGACCAATTTCCCCACCGCTTCCGAACTTCTCGTAAACAACCACAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTCGACTCTTCCTCTCCGCCGCCACCGCCTCCTCTGCTAGACCTCACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCGCACGCCCAGTCCTTTTCTTCGATGCTTTCGCGCGTGCGGACACAGTTATCGCCGTCGGGCGCCGCGACACCTGTGGTTTCGGACGCCCGGCGACCGATTTCCGTCGCAGTGACTCAAATTCCGAGCGACGCGCGCTCCTGGATCTCGATCTCAACGTGGCTCCTCTCCCAGAGGTAGCGTGA 588 0.6429 MAPRDRTTALAGPGPSPTQAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTASELLVNNHSSSNNNSARSPSQSSTLDSSSPPPPPPLLDLTLTPLTASVLPAARPVLFFDAFARADTVIAVGRRDTCGFGRPATDFRRSDSNSERRALLDLDLNVAPLPEVA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2845 195 MobiDBLite consensus disorder prediction 89 109 - -
Vra5g2845 195 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vra5g2845 195 PANTHER ERF FAMILY PROTEIN 1 126 - -
Vra5g2845 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 126 - -
Vra5g2845 195 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g2845 195 MobiDBLite consensus disorder prediction 89 122 - -
Vra5g2845 195 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Vra5g2845 195 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2845 Vra-Chr5 36403665 36404747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2845 13 143 AP2-EREBP Transcription Factor Family AT3G15210 62.162 2.28e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g2845 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2845 K09286 - gmx:100813652 254.603