Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2839 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCGTCTCGATCGGGTTTGCGGCTTCGTAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACACTCGGAACCATGGTGAGTTGAATGATGATAATGATGGGTTGAATCCCGATGCAGGAGTTCGTCGGAGCTCCCGGGTTCGCCGTGCCCCGGTGCTGCTCGACGCATCTCCCGCTCCGCCGAAGAAGCGACGGAGGCTGCGGAAGGGTGGAATTGATCTTGGCGGGGAGAGTCCTATGAGTTTAGGGCGGGAAAATAGAGGTTCAGGTGGGGCTTGGAGTTCTAGACTGAGATCAAGGGTTGGCAATGTAAGTTTTAGGGTAAAAGAGGAGGGGGAATCGCCACGTGGGAAAAGGAAGCTTTTTGAGGGTGTGGTGGGAAAGAAGGGTGATGATGAGGTTGTTAAGAAGGAGGAGTTGGAAGGTTTGATGCCGAAAGTGGTTAAGTCGAAAAGACCGGGGAGGATTAAAGCCACAAAGCACGATGAAGGGCATGAAGATGATGTGTCTAATGGGAGTTTGGAGGGGAGTAAGAGTCAGGAAGTGGTGCTTCTGTCGAGTAGTGACGAGGAGAGTGATTCTGAATCGGAAACTGAATTGTCGGGAGAGGATCAGATGTACGAATCAGATGGAAATTCCCCTTGTATGGTAGGAAATGAGGATGGGGATCAGATGACTGATTCGGATGGGAGTGTCCCTCTCAAGGTAGAGAATGAGGAGAGGAACTTATCCAACGATTTGCAAATGAAGGAGTGTGGCGATGACATTGAATCGTCGTCTCAGGTAGAACGTGAAGAAAAAGTGGATTATCAGTTAGAGGGTGCGAAGGAAAGTGAAAGTGTTGGTAATGCAACTGAACACGTAGACAATGAAGGATTCGTTGGTAAGGAGGTTGATGATGGTGAAAATTTCTTGAAAGATGACAATGTTGATAAGGAGGATGATGTCAATGAAGATGTCTTGAAAGATAAAAGTGCTGGCAGGAACGATGAGTTGAAACATGCTTCAAATGACAAGCGTGGTCACCTGCGTATTAAAGAGGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAGCTCATGATAATGGTGAAAGCGAGAATGAAGCTTATAGTGGATCGTCATCTTCAGAAGAGACTAACTATGATATTTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGTCGTCTCTTGGGTCCTATTAATGATTACCATGGTATTACTAGAATATGGGTTCATCTGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCCAACTTTGGATGCTTAAAAAATGTGAGGGCCGCACTTTTCCGAGGAAGGGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCCACCACTGGTTGTCGTGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCCAGAGCTAGTGGTTGTATCTTTGACCATCGTAAGTTTCTGATTGCCTGCACAGATCATCGGCATCTCTTCCAACCTCGTGGTAGTAAATATTTAGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAACGATCAAATGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCAACGTGATTTATTGAGAATAGCCCCTGTGTACATTGGGGGTTCAGACTCTGCCTGTGAAAATTCATTTCAGGGTTGGGAATCTGTTGCTGGGCTCAGAGATGTCATCCGTTGTATGAAAGAAGTTGTCATTTTACCTCTGTTATATCCTGAGCTATTTGATAATTTAGGGCTTACACCACCAAGAGGTGTTCTTTTGCATGGGCATCCTGGAACGGGGAAAACCTTAGTTGTCCGTGCATTGATAGGTGCATGTGCCCGTGGTGATAAACGAATTGCATATTTTGCCCGGAAAGGTGCAGATTGCTTGGGAAAATATGTTGGTGATGCCGAGCGTCAACTAAGACTATTGTTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGTCTAGCACCCCTTCGCACTAGGCAGCAAGACCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTCTGAAGTCTAGGGGTTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGAATCTGTTGACCCAGCACTTAGGCGCCCTGGTAGGTTTGATCGGGAAATTTATTTCCCATTACCATCAATCGAGGACAGAGCTTCCATTCTCTCACTTCACACTCAAAAGTGGCCAAAACCAATTACCGGATCCTTGCTTGAGTGGATTGCAAGAAAAACACCAGGCTTTGCAGGTGCTGATCTCCAGGCTCTTTGTACCCAAGCAGCTATTAATGCGTTGAAGAGGAATTTTCCATTGCAAGAAGTCTTGTCTTTAGCTGCCCAAGAAAAACATTCTGGTTCTGAGCCAATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGACTGGTTAGAGGCTGTTTTTTCTTCCCCACTTCCCTGCTCTCGAAGAGATGCTGGAAATGCTGCCAATGATGTAGTATGCTCCCCTCTTCCAATCCAGCTTACTCCTTGTTTATTGCAGCCACTGTGCACTCTTCTTGTATCTCTTCATCTTGATGAACGTCTATGGTTACCACTTCCCATATTGAAAGCCGTAACTGTGATAAAGGATGCTACGATTTCTGCTCTGGACAAAAAGCAAAAGCCTTTTGATCACTGGTGGTTGCATATGGATGAATTTCTTCACGAATACAACACTGTTCACGAGTTAAAGAGACATCTTACTTGTTCTGGTATTTTATCTGAGGTTGATGGCATTATTGGTTCTAATGATACAGAGGGTGATACTGACGATAGCAACTTGAGGCTAGAATCCCCCTCAAGGAACCATCTTGGTATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTTCGGATACTAATTTCTGGAGATCCTCGATCTGGCCAGAGACATCTTGCTTCTTGTCTTCTTCACTGCTTTATTGGAAATATTGAAATACAGAAGATTGATATGGCAACTATTTTACAAGAAGGGCATGGAGAAGTGGTGCAGGGGATTGCACAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCGTAGTATTCTTGCCAAAAATTGATTTATGGGCTCTGGAGAAACATTTTCAAATCTCTGAAAGGACTGATTCGTGTTTAAAGAGAGGCAAGTCCTACTTCACACCAAACCAAGTTGTTGTGAAGGAAAGAGAGATCAATAATGAGAAAAGCTCAACTGAGATGGCCAATGGCCAAGCCATCACAAAGGCTTCATTTGCTTGGATGTCATTTGTTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTTTGGCTACTTCGGAAGTTCCCTATAAAGAACTTCCTTGCAAAGTAAGAGAATTCTTCAAGAGTTATCAATCTAGAGACAGCCAGTCAACTCCATTGGAGCATACAGTTCCTCGTTTCTCTGTGCAGATTGATGGGAATTTTGACCATGACATGGTGCTCAATTTATCTGCACTAGAGTTATTGAGAAATGTAGTTAAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGCTCATACGGGTAGCCAAAAGGGCCGCAGAACCTGTGAATCAATTGAAATTTGTAAAAAAAAGGTATGTCAAAGAAACGATGGATCAGATAAAAAGAGTGAAATCCAACACGAGTCCTTTACAAAAGTTTCACCAACACCAACCAGCAAGTCACTGAAGGGAAAGTCAACCCTGTTGTCGGCAATATCTACACTTGGTTATCAAATTCTCTTATACCCTCACTTTGCTGAACTTTGTTGGGTCACTTCAAAACTCAAAGAAGGTCCTTGTGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCTTGTATAATTCGTCCTAATAATTCACACGACAAGATTGTAGTTTCTTGTAATTCTGGTAGCATTAAAAGCAGAGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAGATCAGTTAGGGAAGTTTCCCTGGATGTAAGGAAGGTTCTTGAGGTCTTAATTGAGAAAATCAATACCAAAATTCAAGCTGGGAAAGATAGATATCAATATTTCCGTATTTTATCTCAAGTGGCTTATTTAGAAGACATGGTCAACAACTGGGCTTACTCATTGCTAAGTCTGGAGCAGGATTCCCATGAGCATACAACAAAGGTTACACCAGCAAGTGGTGGGTTATTTAACAGTCATCACATTAGTGAAAAACGCCAAACAGAAGGCGAGGACTGCCATGTTTCTGTTGCTGGAGATGGTCATGATTTGAAGACATTGGAGGAAAGTCATAACGGAATTCCTACCGAAATGGCGGGGTGTATTGCCTCTAACCAAAATGGTAATTTAGATATTGATTGTGATGATGGAAATGCTAGTTCTGAAGGATCTCTACAGAACCATTATTTTTCTGAAAAGCATATCAACAGCTCTGCTGATGCTGCTATGATTGCAAACCAACCTCTTCATCCGGCTACAAGTCAGCAGAATGGAACACTATTAGTACAACATGAATCTCTAACGGCTAGAAATAATGAAAAGGTGCATGAAAAACTAGGGATTTCAAATAACTTCAGCAAATCCATGGGCACTCAAACTGTGGTTCTTTCTGCAAATGGAGTTCACACTGCTTTGGAACCAGAGAAACAGAATATTGAGATTGGTAACCGTCCTGTCTCTGATCAGCCTCTTATTGTGTCCTCATCCTCGCAAGACACTGGTGCAACATTAAGTGATGTCAAATCTGACAAACATGAGAATGCTACAGACAATGATGTCTCTTCAAGTAATGGTAGTGTTCCTGCCGAATCGGGGGTTATATGCTTGTATCAATGTTGCCCTGCATGTCTCCACGGTCTCTATCATTTGACAAAGAAAATACTTCTTAGAGAGTGGGGGATGAACGGTGACCAGTGGAGTGTAGAAGATGTACATGATGCTGTTGCAACATTATCTGTGGATCTTATTTCAACAGTTAGAAAAAGCTTTGTGGCTGAAGATTTCATCGCTTCATCAAATGAAACCTCAAGGCATGAAACATCTCTTGATTGTTGGAACCAGAGAACGTGTAATGCTGAAAACCAAGACAAGGATTTAGTGCCTGTGGAATGTATTTCTCACTCTGCAAGCGAACATGCAACTGCAATTGAAGATGGGGCACTGAATGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATATGGACCCTGACAAGGATGTCTCAGTTCACTGTAAATTTCAGAACTTAAGCCTTTGTTCTCTTAGAGAGTTGATAATAATGACAAAGCGACCTTTTGATTAG 5523 0.4315 MRSSPSSLGSSSRSGLRLRKKHKRLDAICEEEYTRNHGELNDDNDGLNPDAGVRRSSRVRRAPVLLDASPAPPKKRRRLRKGGIDLGGESPMSLGRENRGSGGAWSSRLRSRVGNVSFRVKEEGESPRGKRKLFEGVVGKKGDDEVVKKEELEGLMPKVVKSKRPGRIKATKHDEGHEDDVSNGSLEGSKSQEVVLLSSSDEESDSESETELSGEDQMYESDGNSPCMVGNEDGDQMTDSDGSVPLKVENEERNLSNDLQMKECGDDIESSSQVEREEKVDYQLEGAKESESVGNATEHVDNEGFVGKEVDDGENFLKDDNVDKEDDVNEDVLKDKSAGRNDELKHASNDKRGHLRIKEGRRCGLCGGGSDGKPPKRLAHDNGESENEAYSGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDYHGITRIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGSKYLARIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLQRDLLRIAPVYIGGSDSACENSFQGWESVAGLRDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPLRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPESVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAQEKHSGSEPIPLPSFAVEERDWLEAVFSSPLPCSRRDAGNAANDVVCSPLPIQLTPCLLQPLCTLLVSLHLDERLWLPLPILKAVTVIKDATISALDKKQKPFDHWWLHMDEFLHEYNTVHELKRHLTCSGILSEVDGIIGSNDTEGDTDDSNLRLESPSRNHLGMRSGLFALTNKSGFRILISGDPRSGQRHLASCLLHCFIGNIEIQKIDMATILQEGHGEVVQGIAQILMKCASRQSCVVFLPKIDLWALEKHFQISERTDSCLKRGKSYFTPNQVVVKEREINNEKSSTEMANGQAITKASFAWMSFVEQVESIGVSTSLMILATSEVPYKELPCKVREFFKSYQSRDSQSTPLEHTVPRFSVQIDGNFDHDMVLNLSALELLRNVVKQLVQLIHQRSHAHTGSQKGRRTCESIEICKKKVCQRNDGSDKKSEIQHESFTKVSPTPTSKSLKGKSTLLSAISTLGYQILLYPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSHDKIVVSCNSGSIKSREASGLVRGLIAVGLSAYRGVYRSVREVSLDVRKVLEVLIEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSHEHTTKVTPASGGLFNSHHISEKRQTEGEDCHVSVAGDGHDLKTLEESHNGIPTEMAGCIASNQNGNLDIDCDDGNASSEGSLQNHYFSEKHINSSADAAMIANQPLHPATSQQNGTLLVQHESLTARNNEKVHEKLGISNNFSKSMGTQTVVLSANGVHTALEPEKQNIEIGNRPVSDQPLIVSSSSQDTGATLSDVKSDKHENATDNDVSSSNGSVPAESGVICLYQCCPACLHGLYHLTKKILLREWGMNGDQWSVEDVHDAVATLSVDLISTVRKSFVAEDFIASSNETSRHETSLDCWNQRTCNAENQDKDLVPVECISHSASEHATAIEDGALNDLKFVFRDGVLVHMDPDKDVSVHCKFQNLSLCSLRELIIMTKRPFD* 1841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2839 1840 MobiDBLite consensus disorder prediction 1619 1671 - -
Vra5g2839 1840 ProSitePatterns AAA-protein family signature. 743 761 IPR003960 GO:0005524|GO:0016887
Vra5g2839 1840 ProSiteProfiles Extended PHD (ePHD) domain profile. 400 512 IPR034732 -
Vra5g2839 1840 Pfam ATPase family associated with various cellular activities (AAA) 638 773 IPR003959 GO:0005524|GO:0016887
Vra5g2839 1840 MobiDBLite consensus disorder prediction 23 44 - -
Vra5g2839 1840 SMART AAA_5 634 775 IPR003593 -
Vra5g2839 1840 Gene3D - 774 844 - -
Vra5g2839 1840 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1836 - -
Vra5g2839 1840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 514 IPR013083 -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 366 398 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 1 351 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 1627 1649 - -
Vra5g2839 1840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 831 IPR027417 -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 168 184 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 1270 1296 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 115 160 - -
Vra5g2839 1840 Coils Coil 557 577 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 1282 1296 - -
Vra5g2839 1840 PANTHER AAA DOMAIN-CONTAINING 50 1836 IPR045199 -
Vra5g2839 1840 Pfam PHD-like zinc-binding domain 433 512 - -
Vra5g2839 1840 Gene3D - 599 773 IPR027417 -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 245 351 - -
Vra5g2839 1840 Pfam AAA+ lid domain 799 831 IPR041569 -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 200 216 - -
Vra5g2839 1840 CDD AAA 632 773 - -
Vra5g2839 1840 MobiDBLite consensus disorder prediction 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2839 Vra-Chr5 36297649 36305226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2839 600 870 Calmodulin-binding Proteins AT3G56690 37.729 1.81e-45 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2839 - - gmx:100803849 2788.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2839 5 36297649 36305226 Vra5g2839 5 36297649 36305226 ECH