Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2831 ATGGATCAAACAACGGATTCAGAAATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAAACACAAACATCTCACAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTGTGCCAGACGCTTATGACAATGCTAGGATGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGAAATGGGTGTGCCAGCGGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGTGTTTTCCCTCTGCCTCTAAATCACAGAGCTTCTGAGCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAATTCTGGTTTCATGGATGATGTTAGAGGTCCCTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACGCACTGCTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGTGTCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAACAGGCCAGGTGAGTCTATCATGGTGCATGACCATAATCATTTGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCGTGGTTGGACCAGCAGTTGAACGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGCACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGGAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCACAATTATCATCACCCAGCAATGCCTATGCAAGGAGTAAGAGGTCATAATATCAACTTTCACCCTGCAGTAACTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGCGGTGTTGCTATTCCACCGCAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCAGCCGGCTTCCGGATTTATCGACCTCATAGGGGGATTGTGCCAGAGACAACTCTTGGACACCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGNCAATGTTAGCACCGGTTTATCAGAGGAAACAATCACAAATCAGTTGAAAACAAAATCCTATTCCTCAAGTGCTACTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATACCATGCGGATTGCTTAAGGAAATGGTTGGTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1587 0.4417 MDQTTDSEMDQQRRGYHHSEPCILTRGNTNISQPNNMHAMVRASGNTTNVDSHFVPDAYDNARMYGVTQYNGIQHPHNLEMGVPAAANLYYSGINPSSGAGVFPLPLNHRASEQLPGSSTFAVAGVSSDNFGRNSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARRTADGVAMMDAAPFSFRVPSLVEVGPHGSAWNRPGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLNGNNNDGHTTPWNQSLPMPYVQAPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPAMPMQGVRGHNINFHPAVTAASFRVPINPSRGVAIPPQPGFELGPRHVGPAPSAGFRIYRPHRGIVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIXNVSTGLSEETITNQLKTKSYSSSATGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRKDV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2831 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 521 IPR013083 -
Vra5g2831 528 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g2831 528 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 130 525 - -
Vra5g2831 528 MobiDBLite consensus disorder prediction 236 320 - -
Vra5g2831 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 130 525 IPR045191 GO:0061630
Vra5g2831 528 SMART ring_2 476 516 IPR001841 -
Vra5g2831 528 SUPERFAMILY RING/U-box 469 521 - -
Vra5g2831 528 Pfam Ring finger domain 474 517 IPR001841 -
Vra5g2831 528 MobiDBLite consensus disorder prediction 1 34 - -
Vra5g2831 528 MobiDBLite consensus disorder prediction 238 276 - -
Vra5g2831 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2831 Vra-Chr5 36187848 36191783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2831 393 521 C3H Transcription Factor Family AT2G15530 47.407 1.41e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2831 K19041 - gmx:100800642 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2831 5 36187848 36191783 Vra5g2831 5 36187848 36191783 ECH