Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2829 ATGGCACAGTTACCTCCCAAAATACCAACCATACCCCAAAATTGGCCATCTTTTTCTCACCAAAGAGTGCCCACAATGGCCAACTTCACCCCCACAACCTCATCCACCACCACCACCACCACCGTCCCCGCCGCCGCCACCACTACTGCCCCCTCCCAACCCTCATGGGTCGACGAATTCCTCGACTTCTCCTCGACCCGGCGGGGGGCTCACCGCCGATCCGCCAGCGACTCCATTGCCTTCCTCGAGACGCCGTTTCTTGAGGAATGTCGAGCCGGTTTCGACCGGCTCGACGAGGACCAGCTGATTTCCATGTTCTCCGATGACATTGCAGCAGCGGCTCTCCCGCCGCCTCCGCTTTCATCGGCGTCCAACCCCTCCTCGCCGTCCTCCGACCAAAATAGCAACAACGAGGACAAGCCCATGGCAATGACGTTGGACCTTAAGCCGAAGACGGAAAAGGTTGAAGAGGAGAGCTCGTGCAAGAATGAGGCGGCGGCGCTGCAACTCTCCGCCACTACCACCTCCCCTGAAACCGTTGTCGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACAGGCAATCAGCACAGAGATCAAGGGTAAGAAAGTTACAATACATCTCTGAGCTTGAAAGAAGCGTAACAACATTACAGACGGAGGTATCAGCATTGTCTCCACGAGTTGCATTTCTGGACCATCAACGTTTGATTCTTAATGTCGACAACAGTGCCTTAAAGCAACGTATTGCTGCTTTGGCCCAAGACAAGATTTTCAAAGACGCTCATCAAGAGGCATTGAAGAAGGAAATAGAGAGATTGAGGCAAATCTACCACCAACAGAACCTACAGAAGATGAGTAACACAGTGAACAACAATCTTCAAACCCCATCAACATCACAGCCACAAGCAACTATTCAATCACATACCCTTCATCAGCATCAGCATCAGCAGCAGATGGCAGTGTCTCAACCATTGGGATGTAAGGACAAGGAGCAGCTCTTGAGTTGA 1008 0.5198 MAQLPPKIPTIPQNWPSFSHQRVPTMANFTPTTSSTTTTTTVPAAATTTAPSQPSWVDEFLDFSSTRRGAHRRSASDSIAFLETPFLEECRAGFDRLDEDQLISMFSDDIAAAALPPPPLSSASNPSSPSSDQNSNNEDKPMAMTLDLKPKTEKVEEESSCKNEAAALQLSATTTSPETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLQKMSNTVNNNLQTPSTSQPQATIQSHTLHQHQHQQQMAVSQPLGCKDKEQLLS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2829 335 Pfam bZIP transcription factor 184 228 IPR004827 GO:0003700|GO:0006355
Vra5g2829 335 PANTHER BASIC LEUCINE ZIPPER 34 1 303 - -
Vra5g2829 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 234 IPR004827 GO:0003700|GO:0006355
Vra5g2829 335 PANTHER BASIC LEUCINE ZIPPER 2 1 303 - -
Vra5g2829 335 Coils Coil 263 283 - -
Vra5g2829 335 Gene3D - 183 282 - -
Vra5g2829 335 MobiDBLite consensus disorder prediction 114 142 - -
Vra5g2829 335 SMART brlzneu 180 244 IPR004827 GO:0003700|GO:0006355
Vra5g2829 335 SUPERFAMILY Leucine zipper domain 184 238 IPR046347 GO:0003700|GO:0006355
Vra5g2829 335 CDD bZIP_plant_RF2 185 235 IPR044759 GO:0003700|GO:0006355
Vra5g2829 335 MobiDBLite consensus disorder prediction 28 51 - -
Vra5g2829 335 MobiDBLite consensus disorder prediction 289 335 - -
Vra5g2829 335 MobiDBLite consensus disorder prediction 289 323 - -
Vra5g2829 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 187 202 IPR004827 GO:0003700|GO:0006355
Vra5g2829 335 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2829 Vra-Chr5 36130216 36133885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2829 1 262 bZIP Transcription Factor Family AT3G58120 52.203 3.26e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g2829 bZIP_1 8.7e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2829 - - gmx:100820197 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2829 5 36130216 36133885 Vra5g2829 5 36130216 36133885 ECH