Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2828 ATGCTTCTTGTTCCTCTCTTTTGTTTGATGAGCACTGCGTTAGGAAAAGCAAGTGTTGATGATGGCATGCATGCGAAGATGAAGGGTACCATAGGACTTATTACAGACAACAATTCCCGTAACGGTAAAGAGGAGATAGTTGCTGTTAAGATGGCAATGGAAGATTTCCATCATTATAGCAATCAAAGTTTTGATTTACAGATAAGGGACTCACATGCTGATTCTCTTCAGGCTGCCCTAGCAGCTAGAGATCTTATTGATACACAAAAAGTGGAAGCAATTATAGGACCTGACACATGGAAGGAGACAACTTCAGTGGCTGATATTTGTAGTCAAAATGTGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAGACTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATATCACCTAATCAGTTTAAGCAGATGAAAGCAGTAGCAGCTATTGTACAGTCCTTTGAATGGTACAACGTTAACATAATATACGATGATACCGATTCTTCATCCACGAGAATGTTCTCTCATCTCTATCGTGATCTCAGTGTGTCAGGTGTTCATATAAGCAATGTTTTGGCCATTCCTCCGTTAAGCTCCTCTTCACTGCCTCAAGAACTAGAGAAGCTTAGGAATGGCTTTTGCAGAGTTTTTGTTGTTAATTTGTCAGTTTCTTTGGCCATAAACCTTTTTCAAACTGCAAAGGAATTGAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTCTTACTAGTCTTGTCCATTCATTGAACTCTTCCACTATTTCCTTAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACAAGGACTTCTACTCTAAATTTAGAAAAAAGTTTAGCTTAGAGAACCCTCATGAGCTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTAGCTCTATCCATGAATCAAACAACCAACAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTCAATAATTTTACTGGCTTAGGTGGAAAAATTCATTTCACTGACCAAAAGTTAGATCCTTCAGATACTTTTCAAATCATCAATGTGATGGGTGAAGATTATAAGGAAATTGGTTTCTGGAGAAATGGACTAGGTTTCTCAAATATTATAGGGCAAAATGCTGTTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCGTGGGGAACTCCAAGAGGATGGATTCTAGCATTGAGTAAACCATTAAGAATTGGGGTCCCCGTTATTGACCCATTGAAACAATCCGTAACTGTAATTCAGGACCAAACAGACAATACCACCACTTTCCAAGGATTCACCATTGATATTTTCAGAGCAACTATGGATTTGCTGCCGTATCACTTGCCCTACAAATTGTATCCTTTCAATGGCACCTACGACAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGAGCATAATTTCGTATCGATATCAGTATGCAGAATTCACTCAGCCGTACACTGATCCAGGAGTGCTGATGGTAGTTCCCGTTAAATCAAAAGTGGATCATAGAGGTTGGTTATTTATGAAACCTTTTACGAAGACTATGTGGGTTCTGATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTAGAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTGCATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACATACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTGTAGATAATATTGATCGGCTACGGAATAGCTACATCAAGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATATAGAGAAAGTGTTGCAGTTCCACCCTGAAAACATGAGGAACTACGGAGAACTTGAAGAGTTTGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAGTTCCTGCAGCCAAAATTTTCCTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGATTTGGATTTGCATTTCCAAGGGGGTCTCCACTGATTCCTGATGTAAACAAAGCACTTCTAGATTTAGTAGAAACCGGCAAGGTAAGTGAATTAGAGAACAAAATGCTTGCATCAGAGAAATGTGAAGACACAGAAGTCAATGGAGAAACTGCAAGTCTTAGCCCGAATAGCTTCTGGGTCCTCTTCATATTGACAGGAGGCACATCAACATTTTCTATCTTGGTTTATGTTTTCCGTATGAATTATGCAAACAGTGAAGAGAAAACAATCTGGAGACTAACCACAATGATCATTCAACAATGTAACCATGCAAAGAGAAGAATGTCAAGAAAAGTAAGTGATGTTGCAGAAAACCCTACGACCTCTTCAACGACACATGCTACACCAACTCAAGTTTAA 2586 0.3991 MLLVPLFCLMSTALGKASVDDGMHAKMKGTIGLITDNNSRNGKEEIVAVKMAMEDFHHYSNQSFDLQIRDSHADSLQAALAARDLIDTQKVEAIIGPDTWKETTSVADICSQNVTPVLSLADATPDWSTLKWPYLVQISPNQFKQMKAVAAIVQSFEWYNVNIIYDDTDSSSTRMFSHLYRDLSVSGVHISNVLAIPPLSSSSLPQELEKLRNGFCRVFVVNLSVSLAINLFQTAKELKMMEKGYVWIVTDPLTSLVHSLNSSTISLMQGIVGVKSYFPEIGLQYKDFYSKFRKKFSLENPHELNNEPGIFAARAYDAAWTLALSMNQTTNKKDQTLLDKILLNNFTGLGGKIHFTDQKLDPSDTFQIINVMGEDYKEIGFWRNGLGFSNIIGQNAVFNSSMKELGQVLWPGRPWGTPRGWILALSKPLRIGVPVIDPLKQSVTVIQDQTDNTTTFQGFTIDIFRATMDLLPYHLPYKLYPFNGTYDNLVKQVYLKNFDAVIDVSIISYRYQYAEFTQPYTDPGVLMVVPVKSKVDHRGWLFMKPFTKTMWVLILAMVIYNGFILWMLERRHSPEIRGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTVDNIDRLRNSYIKVGYSSGSFLKHYIEKVLQFHPENMRNYGELEEFAEAFRRKEIGVAFLEVPAAKIFLAKYCKEFIQAGPLYKVGGFGFAFPRGSPLIPDVNKALLDLVETGKVSELENKMLASEKCEDTEVNGETASLSPNSFWVLFILTGGTSTFSILVYVFRMNYANSEEKTIWRLTTMIIQQCNHAKRRMSRKVSDVAENPTTSSTTHATPTQV* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2828 861 MobiDBLite consensus disorder prediction 843 861 - -
Vra5g2828 861 Gene3D - 141 383 - -
Vra5g2828 861 SUPERFAMILY Periplasmic binding protein-like I 31 421 IPR028082 -
Vra5g2828 861 Gene3D - 425 540 - -
Vra5g2828 861 Gene3D - 37 364 - -
Vra5g2828 861 Gene3D - 713 772 - -
Vra5g2828 861 PANTHER GLUTAMATE RECEPTOR 20 856 - -
Vra5g2828 861 MobiDBLite consensus disorder prediction 838 861 - -
Vra5g2828 861 Pfam Receptor family ligand binding region 48 371 IPR001828 -
Vra5g2828 861 SUPERFAMILY Periplasmic binding protein-like II 427 763 - -
Vra5g2828 861 SMART GluR_14 430 767 IPR001320 GO:0015276|GO:0016020
Vra5g2828 861 Gene3D - 541 684 - -
Vra5g2828 861 Pfam Ligand-gated ion channel 764 796 IPR001320 GO:0015276|GO:0016020
Vra5g2828 861 Pfam Bacterial extracellular solute-binding proteins, family 3 451 763 IPR001638 -
Vra5g2828 861 PIRSF IGluLR_plant 1 860 IPR017103 -
Vra5g2828 861 CDD PBP1_GABAb_receptor_plant 31 390 IPR044440 -
Vra5g2828 861 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 856 - -
Vra5g2828 861 CDD GluR_Plant 427 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2828 Vra-Chr5 36091292 36099508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2828 3 829 Ion Channels AT2G29110 32.488 1.58e-139 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2828 - - var:108332761 1532.31