Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2827 ATGGGTAGCTTGCATATGCTTCTTGTTCCTCTCTTTTGTTTGATGAGCACTGCATTTGGAAAAGCAAGTGTTGATGATGGCATGCATGCGAAGATGAAGGGTACCATAGGACTTATTACAGACAACAATTCCCGTAACGGTAAAGAGGAGATAGTTGCTGTTAAGATGGCAATGGAAGATTTCTATCATTATAGCAATCAAAGTTTTGATTTACAGATAAGGGACTCACATGCTGATTCTCTTCAGGCTGCCCTAGCAGCTAGAGATCTTATTGATACACAGAAAGTGGAAGCAATTATAGGACCTGACACATGGAAAGAGACAACTTTAGTAGCTGATATTTGTAGCCAAAATGTGACCCCAGTTCTATCTCTAGCTGATGCAACTCCAGACTGGTCAACTTTGAAGTGGCCCTACCTTGTGCAAATCTCACCTAATCAGTTTAAGCAGACGAAAGCAGTAGTAGCTATTGTACAATCCTTTGAATGGTACAACGTTAACATAATATACGATGATACTGATTCTTCATCCACGAGAATGTTCTCTCATCTCTACAGTGATCTCAGTGTGTCAGGCGTTCATATAAGCAATGTTTTGGCCATCCCTCCGTTAGGCTCCTCTTCACTGCCTCAAGAACTAGAGAAGCTTAGGAATGGCTTTTGCAGAGTTTTTGTTGTTAATTTGTCAGTTTCTTTGGCCATAAACCTGTTTCAAACTGCAAAGAAATTGAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTTTTACAAGTCTTGTCCATTCATTGAACTCTTCCACTATGTCCTCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGCACTTCTACTCTAAATTTCGAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAACAATGAGCCTGGGATATTTGCAGCACGTGCTTATGATGCTGCATGGACTCTAGCTCTATCCATGAATCAAACAACCAACAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTCAATAATTTTACTGGCTTAAGTGGAAAAATTCATTTCATTGACCAAAAGTTAGATCCTTCAGATATTTTTCAGATCATCAATGTGATGGGGAAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAAATATTATAGGCCAAAATTCTATTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGACGACCTTGGGGAACACCAAGAGGATGGATTCCAGTATTGGATAAACCACTAAGAATTGGGGTCCCCGTTTTGGCCACATTGAAACAATCCGTATCTGTAATTCAGGACCAAACCGAAAATACCACCACTTTCCAAGGATTCACCATTGATATTTTCAGAGCAACTATGGAGTTGCTGCCCTATCACTTGCCCTACAAATTCTATCCTTTCAATGACACGTACGATAATTTGGTGAAGCAAGTTTATTTGAAGAATTTCGATGCAGTAATTGATGTGAGCATAATTTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGATCCAGGAGTGGTGATGGTAGTTCCCCTTAGATCAAAAGTGGATCATAGAGGTTGGTTATTTATGAAACCTTTTACAAAGACTATGTGGGTTTTAATACTGGCCATGATTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTAGAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACTCCTCTAGTCAAGTTAGATGGAGACAAGCTACATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTGTTTGTGTCACTTATCATAACACAGACATACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTCTAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATGTGGAGAATGTGTTGCAGTTCCACGCTGAAAACTTGAGGAACTATGCAGAACTTGAAGAGTATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTGGAAGCTCCTGCAGCCAAAGTTTTTCTAGCAAAGTACTGTAGAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGATTTGGATTTGCATTTGCAAGGGGGTCTCCATTGATTCCTGATGTAAACAAAGCACTTCTACATTTAGTAGAAATCGGCAAGTACGGTATTCAAGAATCATTTTCGAAGTTTTCTGATGCACAGGATCCCCTTATAGAAGCAAGTGCAAAGCATACTTACTCTGAATAA 2370 0.3987 MGSLHMLLVPLFCLMSTAFGKASVDDGMHAKMKGTIGLITDNNSRNGKEEIVAVKMAMEDFYHYSNQSFDLQIRDSHADSLQAALAARDLIDTQKVEAIIGPDTWKETTLVADICSQNVTPVLSLADATPDWSTLKWPYLVQISPNQFKQTKAVVAIVQSFEWYNVNIIYDDTDSSSTRMFSHLYSDLSVSGVHISNVLAIPPLGSSSLPQELEKLRNGFCRVFVVNLSVSLAINLFQTAKKLKMMEKGYVWIVTDPFTSLVHSLNSSTMSSMQGIVGVKSYFPEIGLQYEHFYSKFRKKFSSENPHELNNEPGIFAARAYDAAWTLALSMNQTTNKKDQTLLDKILLNNFTGLSGKIHFIDQKLDPSDIFQIINVMGKDYKEIGFWTNGLGFSNIIGQNSIFNSSMKELGQVLWPGRPWGTPRGWIPVLDKPLRIGVPVLATLKQSVSVIQDQTENTTTFQGFTIDIFRATMELLPYHLPYKFYPFNDTYDNLVKQVYLKNFDAVIDVSIISYRYQYAEFTQPYTDPGVVMVVPLRSKVDHRGWLFMKPFTKTMWVLILAMIIYNGFILWMLERRHSPEIRGSMLNQTGTMAWLALTPLVKLDGDKLHSNLSKMVMVVWLFVSLIITQTYTANLASMLTAERLEPTLDNIDQLRNSNIRVGYSSGSFLKHYVENVLQFHAENLRNYAELEEYAEAFRRKEIGAAFLEAPAAKVFLAKYCREFIQAGPLYKVGGFGFAFARGSPLIPDVNKALLHLVEIGKYGIQESFSKFSDAQDPLIEASAKHTYSE* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2827 789 Pfam Ligand-gated ion channel 553 658 IPR001320 GO:0015276|GO:0016020
Vra5g2827 789 SMART GluR_14 435 763 IPR001320 GO:0015276|GO:0016020
Vra5g2827 789 Gene3D - 42 369 - -
Vra5g2827 789 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 762 - -
Vra5g2827 789 SUPERFAMILY Periplasmic binding protein-like I 36 426 IPR028082 -
Vra5g2827 789 Pfam Bacterial extracellular solute-binding proteins, family 3 458 762 IPR001638 -
Vra5g2827 789 SUPERFAMILY Periplasmic binding protein-like II 450 762 - -
Vra5g2827 789 Gene3D - 146 388 - -
Vra5g2827 789 CDD PBP1_GABAb_receptor_plant 36 395 IPR044440 -
Vra5g2827 789 Gene3D - 546 690 - -
Vra5g2827 789 PANTHER GLUTAMATE RECEPTOR 25 762 - -
Vra5g2827 789 CDD GluR_Plant 432 761 - -
Vra5g2827 789 PIRSF IGluLR_plant 3 767 IPR017103 -
Vra5g2827 789 Pfam Receptor family ligand binding region 53 376 IPR001828 -
Vra5g2827 789 Gene3D - 429 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2827 Vra-Chr5 36075467 36083170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2827 8 777 Ion Channels AT2G29110 32.838 1.36e-129 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2827 - - vra:106760680 1584.7