Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2820 ATGGTTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGGGGACACATTGTGCGGTCCACGGGGCGGAAGGATCGCCACAGCAAAGTGTGCACCGCCAAAGGGCCGCGCGACCGCCGGGTGAGGCTATCGGCCCACACCGCAATTCAATTCTACGACGTGCAGGATCGGTTGGGCTACGACCGGCCCAGTAAGGCTGTGGACTGGCTCATCAACAAAGCCAAGGACGCCATCGACCAACTCGCGCATCTCCCTCCCTGGAAACCCACCCTTTCGACAGCAAACCACCTAAACGACGACGAATCAGACAAAACAAACCCTAATAACCCCAACTCAACCACAAACACCAGCACAAACCCTGATGCTGAAATTCTGAACCAGTTCAACGAGAACCTTGAGAACGATGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGTTCGAGTTATCTTCCGTTGGATAACGACGCGATAAGATCGTTCTTTCCCACAACGACGTCGTCGTTGATTCAGTTCCAAAGCTACCCACCGGATTTGCTTTCGAGGACGAGCAGCCAGGATTTGCGTCTCTCGCTTCAGTCCTTGCAGGACCCGATTATGCTCCACCATAACCAAAACGAGCACGTTCTTTTCGCTGGAGCCGGGTTTGATAATATGGGAGCTTGGAACAACAGTGGGAATGCTACTAATGATACTCATGGTGGTGGAGGTGGAGGAGGGTTTGTGGTTAACGCTCCCTCGCCTTTGCCGGGGCCGGCGACGGTGGCGCCGCCGGCGGTGGTTTTTGGCTATGGTAATGGGAATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCGTCCGTTCGTGCGTGGATAGACGCGCCGTCGTTCGTGGCCGCCGCCGATCATTATCATCGGCATCATTACTTGTCACCGGCGGCGGCTGCGGCGGCGTTGGTGTATCAGTCATCTCCTTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCATGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGCTGA 1113 0.5696 MVGGGGGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKDAIDQLAHLPPWKPTLSTANHLNDDESDKTNPNNPNSTTNTSTNPDAEILNQFNENLENDGGGGGGGGGGGGSSYLPLDNDAIRSFFPTTTSSLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPIMLHHNQNEHVLFAGAGFDNMGAWNNSGNATNDTHGGGGGGGFVVNAPSPLPGPATVAPPAVVFGYGNGNGQGQYFSQRGPLQSSNTPSVRAWIDAPSFVAAADHYHRHHYLSPAAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2820 370 Pfam TCP family transcription factor 27 112 IPR017887 -
Vra5g2820 370 MobiDBLite consensus disorder prediction 22 43 - -
Vra5g2820 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 213 IPR005333 GO:0003700
Vra5g2820 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 220 369 IPR005333 GO:0003700
Vra5g2820 370 MobiDBLite consensus disorder prediction 109 138 - -
Vra5g2820 370 MobiDBLite consensus disorder prediction 1 43 - -
Vra5g2820 370 MobiDBLite consensus disorder prediction 345 370 - -
Vra5g2820 370 PANTHER TRANSCRIPTION FACTOR TCP4 10 213 - -
Vra5g2820 370 PANTHER TRANSCRIPTION FACTOR TCP4 220 369 - -
Vra5g2820 370 ProSiteProfiles TCP domain profile. 28 86 IPR017887 -
Vra5g2820 370 MobiDBLite consensus disorder prediction 94 155 - -
Vra5g2820 370 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2820 Vra-Chr5 35881443 35883934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2820 9 369 TCP Transcription Factor Family AT3G15030 46.729 1.30e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra5g2820 TCP 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2820 - - gmx:100802063 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2820 5 35881443 35883934 Vra5g2820 5 35881443 35883934 ECH