Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2818 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTTCCTGGGAGGTTGCTAGTCCCACCATTGCAGCGCTCGTTCACTTTCCGGCGGCGGTTTCTGGTGACTGCATCCCAAAGGAAGAAGAAAGAGAAGGTTATTGTCATTTCCGGACCCACCGGTTCGGGCAAGAGCCGCCTCGCATTGGAACTCGCTAAGAGCCTCAACGGCGAAATCGTCAGTGCAGACTCTGTCCAGGTATATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGACGAAAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGTTTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGTGATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAATGACGACTGGGATACAGCTGTACGGTTGGTGGTAAAAGCAGGAGACCCAAAGGCTCAATTTCTAGCAGTGAATGATTGGTATCGACTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGGTACCATATGATTCTTTCAGGGAACAGGGTGAATGTAGTGTTGCTGAGGATTCTGAGTCATCTGATATGAACACGTACAGTGATGGAATGGAAGAAACCAGCTCATCAGATTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAGATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGCTTTTGTCTGAGGCTCAGTGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGCTGCAGAGTTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAGTTGACATGGTTTCGTAATGAAAAGATATACCAGTGGCTTGATGGTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGATTGGAATGGAAGTCTTCCTGTGCCTGAACACTTAAGAATGTCGAGAGATATTTCTAATCGCCGAGATGAAAAACATCTAAAGTCTTACCGCTCCAGAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAATTGGATAAGCAAGACTCAAAGGTGA 1347 0.4402 MINNGVCTLRTCFRFPGRLLVPPLQRSFTFRRRFLVTASQRKKKEKVIVISGPTGSGKSRLALELAKSLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPVITSEVNQELAELQRNDDWDTAVRLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGECSVAEDSESSDMNTYSDGMEETSSSDLDYEFMCFFLSSHRLDLYRSIDYRCEDMLLGRDGLLSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSAAEFYKFLFEFQKASRNFAKRQLTWFRNEKIYQWLDGSKPLETILSFINGAYHDWNGSLPVPEHLRMSRDISNRRDEKHLKSYRSRNRHFVKGEDCSHILNWISKTQR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2818 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 36 447 - -
Vra5g2818 448 TIGRFAM miaA: tRNA dimethylallyltransferase 47 224 IPR018022 GO:0008033
Vra5g2818 448 Gene3D - 44 438 IPR027417 -
Vra5g2818 448 Gene3D - 156 226 - -
Vra5g2818 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 36 447 IPR039657 -
Vra5g2818 448 Pfam IPP transferase 80 369 - -
Vra5g2818 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Vra5g2818 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2818 Vra-Chr5 35786421 35792767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2818 50 224 C2H2 Transcription Factor Family AT2G27760 29.508 7.54e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2818 K00791 - gmx:100808814 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2818 5 35786421 35792767 Vra5g2818 5 35786421 35792767 ECH