Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2816 ATGGGGTCACCGTTCAGACCAATCTCATGCACCAGAAAAACTCCATACAGAATAGAAACCAGGAACTTGTCATACAAGTTGTGCAGCCAACTTGATGAGTATAGAAGTCTTTGTTTTGGTTCCAGTCCAGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAGCTGACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCAGGGAGAATACCCCCATGTAATAAAGTTTCTGGTCATGTGCTTGTCAATCATAGACCTATGGATGTGAACTGGTTTAGAAGAACATCAGGGTATGTGACACAAGATGATGCTTTATTCCCTTCACTGACTGTTAGAGAGACACTAATGTACAGTGCCATGCTGAGGCTTCCTGGGGGAAGAAAAGTTGCTGCCGTCAGAGTTGAAGAGTTGATGAAGGAGCTTGGGTTGGACCATATTGCAGATTCAAGAATTGGAGGTGGAACAGACCACGGTATATCCGGAGGAGAAAGGCGTAGAGTTTCTATTGGTGTGGACTTGGTTCATGATCCTGCTGTTATTTTGATTGATGAACCGACTTCAGGGTTGGATTCAGCATCAGCTCTTAATGTAGTCGCATTGCTTAGACTTGTGGCGTTTAATCAAGGTAAGACAATTATCTTAACGATCCACCAACCTGGTTTCCGAATCTTAGAGCTGTTTGATGGCCTCATTTTGCTGGCCGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAAGCTAGACTCAAGTTAGCTGGACACCACATTCCTGACCATGTCAATGTCCTTGAGTTTGCTCTTGATGTCATGGAAAGCTTGGTTATACATACTTCAGAATCTGGGGACAACCAGTTTCTGCTCAAAGACAACCAAGATCATAAAATTAGAATGCAGCATTCTAAGGTTGTCAAAGTAAAGGCAATTTCATATTCAAATTCTCCTACGGAGGAGATTGCAATCCTAGGACAAAGATTTTGCTGCAACATATTCAGAACCAGGCAATTGTTTGTCACCAGAATCATACAGGCCATAGTAGCTGGTTTTGTTCTGGGGAGCATTTTTTTCAATGTTGGCAATCAACAAAGTCATGTAGCATTGCAAACAAGGAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCTACAACAGAAGGCTTGCCTATTTTCTTGGATGAGAGAAGAACTTTTATGAGAGAAACCTCTGGAGGAGCTTATAGAGTTTGTTCCTATGTTTTAGCTAATGCCCTTGTGTTCCTTCCCTTCCTTCTATTGGTTGGTCTTCTGTTCTCTACTCCAGTTTATTGGCTTGTAGGATTAAGGAAAGATATCGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTTCTACTCATGTCCAATTCTCTTGTGGCTTGTTTCAGCGCTCTGGTGCCAAATTTCATCCTGGGAACCTCAGTGATTGCAGGTCTAATGGGGTCTTTCTTTTTATTCTCAGGTTATTTCATATCTGAGGAAAAAATACCAAGTTATTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTATGATTAATGAGTATGGTGGGGAGAGAGGGAAGACGAGGTGCTTAGAAATTAGCAATGGGAAATGCATACTACATGGAGTTGAATTCTTAAGACAACAGGGTCTGAAAGATTCACAAAAATGGAGCAATTTGCCTGTAATGTTGAGTTTCATAGTGGGATACAGAGTGCTTAACTTTTTTATTCTTTGGTTCAGATGCTACAGGACAAGAAAATAG 1836 0.415 MGSPFRPISCTRKTPYRIETRNLSYKLCSQLDEYRSLCFGSSPGRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPPCNKVSGHVLVNHRPMDVNWFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAVRVEELMKELGLDHIADSRIGGGTDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVALLRLVAFNQGKTIILTIHQPGFRILELFDGLILLADGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMESLVIHTSESGDNQFLLKDNQDHKIRMQHSKVVKVKAISYSNSPTEEIAILGQRFCCNIFRTRQLFVTRIIQAIVAGFVLGSIFFNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLDERRTFMRETSGGAYRVCSYVLANALVFLPFLLLVGLLFSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLMINEYGGERGKTRCLEISNGKCILHGVEFLRQQGLKDSQKWSNLPVMLSFIVGYRVLNFFILWFRCYRTRK* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2816 611 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Vra5g2816 611 CDD ABCG_EPDR 41 257 - -
Vra5g2816 611 Pfam ABC-2 type transporter 232 297 IPR043926 GO:0140359
Vra5g2816 611 Pfam ABC transporter 51 202 IPR003439 GO:0005524
Vra5g2816 611 Gene3D - 15 276 IPR027417 -
Vra5g2816 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 603 - -
Vra5g2816 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 275 IPR003439 GO:0005524
Vra5g2816 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 4 603 - -
Vra5g2816 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 267 IPR027417 -
Vra5g2816 611 Pfam ABC-2 type transporter 334 545 IPR013525 GO:0016020|GO:0140359
Vra5g2816 611 SMART AAA_5 60 252 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2816 Vra-Chr5 35772784 35775215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2816 31 262 Calmodulin-binding Proteins AT2G36910 27.459 5.08e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2816 K05681 - gmx:100807754 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2816 5 35772784 35775215 Vra5g2816 5 35772784 35775215 ECH