Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2814 ATGTTGATCAGCAACGAAGTAGAGGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAAATTTTTTCAGAGGTCTTTTCTGGCTGTGGTAGAGAACCAATTGCATTCCGGTTGGTTGAATCATCCAAACATGGTGTGATATCTAGTTGTTATCTATTGAACCATAACAATTTAAATAAACAAGCTGTTAAGGATGAGATAGATGTTACAAACTTTAACACAGCAACAGCAGACGGACATATTGCAAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCGAGCAGGCTTGTAGTTACTAGTCCATCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAAGAAATGCCAGAATTGACTAATGTGGACATCTCAAATTCACCCTCAACGCTACAGGAAGAGGACCCTCGTACTATTCTGCAGTTTCAGATTGTTCACTTGCTTACTATGGCAGGGTGGACTATTGAGAAGCGACAACGGCCGAGCAGGCGTTATCCAGAGTCAGTTTATAGGACCCCAAAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTAATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGATAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTGTGTTGGCTTATCGATGGTGCCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTGTCTTGTGCTCCCATTGATTCAAGGTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATTCTGTTCGTCAAGCAAAAATTAGAAATTCTAGAAGTCTTGATAAGCAGAGTTCAGAAAACTATCAGGAAACAGATAATATTATTGATGGACATGCGCCAATGGACATGTCAGAAGAAAATAACACATCCAGTGTAAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATACAACAGTCTGAGTGTAGTGAGGAAGACGGTGGGAAAATCATAGCAGATCCTGTATCTGGCAAAGATAGCACATTTTCTGTTTCTAATCTTACTCTTAGAAAGAAAATGAGAAGGAAGTGCAAAAGGGTATCTGAAATTAGAATGAGTATGTCCTACCATGGTGACATGCTGGGCTCAACTGTCACTAACCAGGTGCAGTCACTAGATGGTGAAGCACGTGGTTTGGAAGAGGTCAAGAATTATCTAGACGACAATGCTGGAAGGAAAAGAAGCTGCAGAAAGTTATCATCTGCTACTGCAGTTCAGAGAAATATCAGGAAAACAAACTGCTCCGTAAGTGGAACGGATAGGTCTAACAGATGCCAGATTAAAGATGATGATTTATTGGTGTCTGCCATATTCAGGAATAAGGACTTCGGGCCAAAGGCAATCCGGGGAAATTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAACTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCTGTAATGGAGGAAAGTACAATAAGGACTGTAATAGGTCTTATATGGGTTCAAGGACAATATTGTCCTGGTTGATTGATAATGGGATCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGTGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGAAGATAATGACAAAAATGATGATTCATGCGGGTTATGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGCAGCTTGTTTGTCCACTCAGGAGATCCCAGACGGTGACTGGTATTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCAGGAGTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTGACAGATAGAGAAACAAGAGAAGGAGCGGCCTCAGACATATGGTTTTGTGGGCACAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGACATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCAATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAAAAGGATGTGTTAGTATCTGTAGCATCTATCAGGGTGCATGGAACCACAGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTTTCGTCGCCAGGGAATGTGCCGTCTCCTTGTGAGTGCCATCGAGGAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACATGATGATATTTCCTGGGACAGTGTTTCTTGAGAAACCGTTACACAGGAAGATGAAAACTGAAGTTGAAACAGGACTGTGTGATGAATCAACTCAAGCAACAGATGAATCCGTCAAAGTATGCATCAGTTCTGAAGGAATGACCATTACTGACTCATTTCTACCAGATGTTGCAAACATTACCACCAATCAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGACGGTAAAATTCAGCCAGACAATGAAGCTGGCAGTGATACCCTGAGAAAAGACAATACACAACCTGTTGACACTGCATTGGAAGCCAAAGAATCAACAGAAATAAGTAGTAGCTGTTTTACGGAAGAGATCATCCAGTTGACAGTGTCAGGTGGCTCGGAGAAATCTATGGAAGAGAACAATGTGAGCGAACTGAGAACATGCAATAAAGTGGAAATGGAAAGTGATTCAGTACAGCAATCTAGTGAGAATTTTTGTGCAATCAAAGATGGTGCTGAACCAAGTATAAGGATTGTGGAGGAGAAGAATATCAAAATAGGGGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3570 0.412 MLISNEVEDLFDDNFEGSNEERQIFSEVFSGCGREPIAFRLVESSKHGVISSCYLLNHNNLNKQAVKDEIDVTNFNTATADGHIAKEVSVSKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPELTNVDISNSPSTLQEEDPRTILQFQIVHLLTMAGWTIEKRQRPSRRYPESVYRTPKGKPIREFTKAWRICGELLSVEKCNLMCRDYKEWTDISQFWSDLSSALINVDKTKMQSEDPAAVLAYRWCLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVSCAPIDSRSGNLNQVPGGSNVNSVRQAKIRNSRSLDKQSSENYQETDNIIDGHAPMDMSEENNTSSVSYGLVHSHDSRAIQQSECSEEDGGKIIADPVSGKDSTFSVSNLTLRKKMRRKCKRVSEIRMSMSYHGDMLGSTVTNQVQSLDGEARGLEEVKNYLDDNAGRKRSCRKLSSATAVQRNIRKTNCSVSGTDRSNRCQIKDDDLLVSAIFRNKDFGPKAIRGNSRAKSCKSRGQRKLKSQKGRCRLLPRNPCNGGKYNKDCNRSYMGSRTILSWLIDNGIISLNDVIQYRNAKDNVVIKDGRITKDGIICICCGKVLTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQAEDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSTQEIPDGDWYCANCTCRICGNLVIDKDTSDLQELLQCSQCEHKYHETCLTDRETREGAASDIWFCGHSCQEVYTGLQSQVGLVNQVADDISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKKDVLVSVASIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSFKVERLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNMMIFPGTVFLEKPLHRKMKTEVETGLCDESTQATDESVKVCISSEGMTITDSFLPDVANITTNQVEAKSEHEPVDGKIQPDNEAGSDTLRKDNTQPVDTALEAKESTEISSSCFTEEIIQLTVSGGSEKSMEENNVSELRTCNKVEMESDSVQQSSENFCAIKDGAEPSIRIVEEKNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS* 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2814 1189 PANTHER INCREASED DNA METHYLATION 1 338 1187 - -
Vra5g2814 1189 PANTHER INCREASED DNA METHYLATION 1 157 338 - -
Vra5g2814 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 717 IPR013083 -
Vra5g2814 1189 CDD PHD_SF 716 766 - -
Vra5g2814 1189 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 825 949 IPR016181 -
Vra5g2814 1189 CDD PHD1_AIRE 676 715 - -
Vra5g2814 1189 MobiDBLite consensus disorder prediction 1026 1046 - -
Vra5g2814 1189 MobiDBLite consensus disorder prediction 1023 1054 - -
Vra5g2814 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 775 IPR013083 -
Vra5g2814 1189 ProSiteProfiles Zinc finger PHD-type profile. 673 718 IPR019787 -
Vra5g2814 1189 SUPERFAMILY FYVE/PHD zinc finger 661 716 IPR011011 -
Vra5g2814 1189 SMART PHD_3 717 771 IPR001965 -
Vra5g2814 1189 SMART PHD_3 675 716 IPR001965 -
Vra5g2814 1189 Gene3D - 821 960 - -
Vra5g2814 1189 Pfam PHD-finger 676 717 IPR019787 -
Vra5g2814 1189 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 826 973 IPR000182 GO:0016407
Vra5g2814 1189 Pfam Tify domain binding domain 598 648 IPR032308 -
Vra5g2814 1189 PANTHER PHD FINGER PROTEIN 12 338 1187 IPR042163 GO:0003714|GO:0045892
Vra5g2814 1189 PANTHER PHD FINGER PROTEIN 12 157 338 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2814 Vra-Chr5 35734604 35745535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2814 30 1055 PHD Transcription Factor Family AT3G14980 41.675 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g2814 TDBD 8.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2814 - - gmx:100777440 1919.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2814 5 35734604 35745535 Vra5g2814 5 35734604 35745535 ECH