Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2802 ATGGTGAAAAAGACTAACTCTGAAAAAAATGGCCTTAGGAAAGGAACATGGACCCCAGAGGAAGATAAAAAATTGATTGCTTATGTTACGAGATACGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTGAGGCCAAATATCAAAAGAGGAAACTACACTAAAGAAGAAGATGATACCATTATCAAACTTCTCCAAAGTCTCGGTAACAGATGGTCTGCCATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATTAAGAATTATTGGCACACCAATCTGAAAAAACGATATCAACTTCTGAAACCTCAAGTTTCCCACTCAAAGGATCAATCACCACATGAACAAGGACCAAACCCTAACAATAATATCGCACCAACTTCTCAATTCATCGATTCATGCACAACAGCAACATCAACATCAACATCCTCGTCCCAACTCTCTGTAACTACTGCTACCAAAGAAAATTTTCTTGAAACCATTTCTGGGGATGATGATTTTTCTTTTGTGGATGCATACCAACTAGAGCCTGTGAATGAAAGCTTCTTCTTGGAACCATATATGGTTGACATATCGTGCCTTCCTTCTGATATTTTGGTGCCTGAACCCGATTACTTCAGTCCTGTTTCTGACATAGAACTTTGGAATCACAGTAATATATACTATGCGTGA 726 0.3994 MVKKTNSEKNGLRKGTWTPEEDKKLIAYVTRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTKEEDDTIIKLLQSLGNRWSAIAAQLPGRTDNEIKNYWHTNLKKRYQLLKPQVSHSKDQSPHEQGPNPNNNIAPTSQFIDSCTTATSTSTSSSQLSVTTATKENFLETISGDDDFSFVDAYQLEPVNESFFLEPYMVDISCLPSDILVPEPDYFSPVSDIELWNHSNIYYA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2802 241 Gene3D - 69 140 - -
Vra5g2802 241 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra5g2802 241 SMART sant 13 63 IPR001005 -
Vra5g2802 241 SMART sant 66 114 IPR001005 -
Vra5g2802 241 CDD SANT 69 112 IPR001005 -
Vra5g2802 241 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra5g2802 241 MobiDBLite consensus disorder prediction 123 146 - -
Vra5g2802 241 CDD SANT 16 61 IPR001005 -
Vra5g2802 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra5g2802 241 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 211 - -
Vra5g2802 241 Gene3D - 14 66 - -
Vra5g2802 241 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra5g2802 241 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra5g2802 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra5g2802 241 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Vra5g2802 241 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2802 Vra-Chr5 35467560 35470475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2802 1 208 MYB Transcription Factor Family AT1G06180 49.038 7.61e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g2802 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2802 K09422 - gmx:100810385 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2802 5 35467560 35470475 Vra5g2802 5 35467560 35470475 ECH