Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2800 ATGAAGGGATACTTGACAAATCTTCATAGCATTTCTTTGACAAGTTTCTTTTTTTACATCTTCTTTTCTCATCGTTCTCTTGCTGCAATCACAACCCTTTCTGCTGATAAAAAACTCACTGGTGATCAAACTCTCGTCTCCGAAGGTGGCGTCTTTGAACTGGGTTTCTTCAAGCCAGGTAATTCCTCTAACTACTATATAGGCATATGGTACAAAAAGGTCACCACAAAAACAATAGTTTGGGTGGCAAATAGAGACAACCATGTCTCACATAAGAACACTGCCACATTAACAATATCAGGTGGTAATTTGGTTCTCTTAGATGGGTCTTCTAATCAAGTTTGGTCAACAAACACGGGTTCTCCCAGGTCAGGTTCTGTCGTGGAAGCTGTTCTACTAGATTCCGGGAATCTCGTGTTAAGAGATAGGCCTAATGATAATGCTTCGGAGCCTTTGTGGCAGAGTTTTGATCACCCCACGGACACGTTCCTTCCGGGTGGCAAAATTAAACTCGACCATAAAACAAAGAAACCACAATACCTCACTTCTTGGAAGAACACCGAGGATCCTGCTACGGGTCTCTTCTCTCTAGAACTAGACCCTGAAGGCTCCACTGCTTATTTGATTACTCGGAACAAGACTGAACAGTATTGGACAAGTGGCCCTTGGAATGGACGCATTTTCAGTTTGGTTCCAGAGATGAGGTTGAATTATATCTTCAATTTCTCGTTTGTGTCGAACGAGAATGAGAGCTATTTCACTTACTCCTTGTATAACTCTTCCATATTATCTCGGTTATTGATAGATGTCACGGGACAGATCAAGCAACTCACATGGTTGGAGACTACTCAGCAGTGGAACTTGTTTTGGACACAGCCGAGAGATAAATGTGACGTATATGCCTTTTGCGGTGCGTTTGGGAGTTGCACTGAGATGTCAATGATGGGGCCTTGTAATTGCTTGGGGGGATTTGAACCCAAGTCACAGTCTGATTGGAACCTGGAGGATTACTCAGGAGGGTGCCAGAGGAAAACAGAGCTGCAATGCGAGAATTCCAATGCCTCCAACAGGGATAAGTACGGGTTCCTAGTAATTTCCAACGTGGTATTGCCTAAAGATGCACAATTTGTGGGATCAGGGAATGCAGGAGAATGTGAATCAATTTGCTTGAGCATCTGCTCCTGCGCAGCTTATGCATATGACAGTAACGGGTGTTCAATTTGGGTCGGCAACCTTCTGAATGTGCAACAGTTGTCTTCAGATGATAGTAGTGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTACATGATGATAAAAGCAGCAAGGGAACGATTATCGGTGTGGTTGTGGTAGTGGTTGTTGGCATTGGGGTTCTCGTGGCCATCATTCTTTGGCGAAGGAAGAGAATGATGGCATCAAGAAAGGCTGCGGAGGGTTCGTTGGTGGCATATGGATATAGAGATTTGCAAGATGCAACGAGGAATTTCTCTGAGAAATTGGGGGGAGGAGGGTTTGGTTTTGTTTTCAAAGGAACGTTGGATGATTCCAGTGTGGTAGCAGTGAAGAAGTTGGAAAGTTTTAGCCAAAGAGAGAAACAGTTCCAAACAGAAGTTCGGACAATAAGGACAATACAACATGTTAATCTTGTCAGGCTCCATGGGTTCTGCTCTGAAGGCACCAAAAGGCTGCTAGTTTATGAATACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCAGAACAAGAACTTCGTGGTATTGGACTGGAAAACGAGATACGAAATTGCTTTGGGAATAGCAAGGGGATTGGCATACCTTCATGAGAAATGCAGAGACTGTATTATACACTGTGACGTAAAGCCTGAGAACATTCTCTTAGATGCTGATTTTTGTCCCAAGATTGCAGACTTTGGCCTGGCTAAGCTTGTCGGAAGGGATTTCAGCAGGGTCCTCGCAACAATTAGAGGAACAAAAAGCTATCTTTCTCCAGAATGGATTTCTGGGGTGCCTATCACTGCCAAAGCCGACGTGTACAGCTATGGAATGATTCTTTTTGAGCTTGTGTCAGGTAGGAGGAACTCTTATGAGCTATATGACTCTGAAGATGGCCAATTTAGGTTCTTTCCTACCAGGGCAGCAAACATAGTTGCCCGGGGTGGCAATGTTCTTAGCCTTTTGGATCCTTGTTTGGAACAAAATGCTGACGCCGAGGAGGTCACTCGAATGGCAACCGTTGCTTCCTGGTGCATCCAAGACAATGAGATTCACCGGCCAACCATGGGTCAGGTTGTTCATATCCTTGATGGGATCTTGGACGTGAATTTACCTCCAATTCCAACATTTCCTGATGTTAAATGCAGTAAAAATGCTCACTCTTGA 2385 0.4407 MKGYLTNLHSISLTSFFFYIFFSHRSLAAITTLSADKKLTGDQTLVSEGGVFELGFFKPGNSSNYYIGIWYKKVTTKTIVWVANRDNHVSHKNTATLTISGGNLVLLDGSSNQVWSTNTGSPRSGSVVEAVLLDSGNLVLRDRPNDNASEPLWQSFDHPTDTFLPGGKIKLDHKTKKPQYLTSWKNTEDPATGLFSLELDPEGSTAYLITRNKTEQYWTSGPWNGRIFSLVPEMRLNYIFNFSFVSNENESYFTYSLYNSSILSRLLIDVTGQIKQLTWLETTQQWNLFWTQPRDKCDVYAFCGAFGSCTEMSMMGPCNCLGGFEPKSQSDWNLEDYSGGCQRKTELQCENSNASNRDKYGFLVISNVVLPKDAQFVGSGNAGECESICLSICSCAAYAYDSNGCSIWVGNLLNVQQLSSDDSSGETLYLKLAASELHDDKSSKGTIIGVVVVVVVGIGVLVAIILWRRKRMMASRKAAEGSLVAYGYRDLQDATRNFSEKLGGGGFGFVFKGTLDDSSVVAVKKLESFSQREKQFQTEVRTIRTIQHVNLVRLHGFCSEGTKRLLVYEYMPNGSLDFHLFQNKNFVVLDWKTRYEIALGIARGLAYLHEKCRDCIIHCDVKPENILLDADFCPKIADFGLAKLVGRDFSRVLATIRGTKSYLSPEWISGVPITAKADVYSYGMILFELVSGRRNSYELYDSEDGQFRFFPTRAANIVARGGNVLSLLDPCLEQNADAEEVTRMATVASWCIQDNEIHRPTMGQVVHILDGILDVNLPPIPTFPDVKCSKNAHS* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2800 794 SMART serkin_6 496 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2800 794 PIRSF SRK 3 794 IPR024171 GO:0004674
Vra5g2800 794 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Vra5g2800 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 224 IPR036426 -
Vra5g2800 794 CDD B_lectin 39 159 IPR001480 -
Vra5g2800 794 Pfam Protein kinase domain 499 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2800 794 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Vra5g2800 794 Gene3D Phosphorylase Kinase; domain 1 463 570 - -
Vra5g2800 794 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Vra5g2800 794 ProSiteProfiles PAN/Apple domain profile. 349 433 IPR003609 -
Vra5g2800 794 ProSiteProfiles Protein kinase domain profile. 496 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2800 794 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Vra5g2800 794 SMART blect_4 36 159 IPR001480 -
Vra5g2800 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vra5g2800 794 Gene3D - 27 157 IPR036426 -
Vra5g2800 794 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 786 - -
Vra5g2800 794 Pfam D-mannose binding lectin 78 185 IPR001480 -
Vra5g2800 794 SMART ntp_6 357 432 IPR003609 -
Vra5g2800 794 CDD PAN_AP_plant 345 433 - -
Vra5g2800 794 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 9 786 - -
Vra5g2800 794 Pfam PAN-like domain 359 415 IPR003609 -
Vra5g2800 794 SUPERFAMILY Protein kinase-like (PK-like) 484 782 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2800 Vra-Chr5 35438673 35443188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2800 456 779 Receptor kinase-like Gene Family AT5G20050 39.722 1.90e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra5g2800 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2800 - - vra:106760674 1582.77