Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2799 ATGAAGAAGAACCCATGCTTCTGCATCACACTTCTCACCCTATTCTTCTCTTTGTTCACCCACAATTCCCTTGCGGCTCTCACAACCGTATCCACAAACCAAACTCTCACCGGAGACCAAACCCTCGTCTCTGAAGGTGAAATCTTCGAACTGGGTTTCTTCAAGCCGGGTAATTCTACTAACTACTACATAGGCATATGGTACAAAAAGGTCACCAAACAAACAATAGTGTGGGTAGCAAATAGAGACAACCCTGTCTCTGATAAGAACACTGCCACGTTAACAATATCAGCTGGCAATCTAGTTCTCTTGGATGGATCTTCTAAACAAGTTTGGTCAACAAACACGAGCTCTTCTTCCAGGTCAGGTTCGGTTTTAATAGCTGTTCTCCTTGATTCCGGGAACCTTGTGTTAAGAGATAGGCATATTGGTGCTTCTGCTTCAGAACCTCTGTGGCAGAGTTTTGATCATCCAACCGACACGTGGCTCCCGGGTGGCAAAATCAAACTGGACAATAAAACAAAGCAACCTCAATACCTCACTTCATGGAAGAACAACGAAGATCCTGCGACGGGTCTTTTTTCTCTGGAGCTAGACCCCAAAGGAACAACTTCTTATTTGATTCTTTGGAACAAGTCTGAACACTACTGGGATAGTGGTCCTTGGAATGGGCACATTTTTAGTTTAGTTCCCGAGATGAGGGCGAACTTTCTCTACAATTTCACGTTTGTGTCAAACGACAACGAGAGTTATTTCACATACTCCATGTATAACTCTTCAATTATATCTCGGTTTGTGATGGATGTCTCGGGGCAGATCAAGCAACTCTCGTGGTTGGAGACTGCTCAGCAGTGGAACTTGTTTTGGTCACAGCCGAGACAACAGTGTGAGGTATACGCGTTTTGTGGTGCGTTTGCGAGATGCACTGAGAACTCCATGCCGTATTGTAATTGCTTGCCGGGTTTTGAGCCAAAGTCGCTGTCTGATTGGAATCTGGAGGATCACTCAGGTGGGTGTGAAAGGAGAACTAATTTGCAGTGTGAGAATTTGAATCCCTCTAAAGGGGATAAGGATAGGTTTCTTGCGATTCTCAACATGGCGTTGCCTAAACATGCACAATCTGTGGGATCAGGGGAGGCAGGGGAATGTGAATCGACTTGCTTAAACAACTGTTCCTGCACGGCTTATGCATATAACAGTAGGGGGTGTTTCATTTGGATTGGCAACCTTTTGAATCTGCAGCAGCTATCTTTAGATGATAGTAGCGGAGAAACTTTGTATCTCAAACTTGCAGCATCTGAGTTTCGTGATGATAAAAGCAGCAAGGGAACTGTTATTGGTGTGGCTGTGGGATTGGTTGTTGGCATTGGGGTTCTCTTGGCCATTCTTTTGTTTTTCGTGATCAGGCGAAGGAAGAGAATGGTTGGAATAGGAAAGCCTGTGGAGGGAACGTTGGTGGCATTTGGGTACAGAGATTTGCAAAATGCAACGAGGAATTTCTCTGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTCAAAGGAACTTTGGGGGATTCAAGTGTGGTAGCAGTGAAAAAGTTGGAGAGTATTAGCCAAGGAGAAAAACAGTTCCGAACGGAAGTTAGCACAATAGGGACAGTGCAACATGTTAATCTTGTTAGGCTGCGTGGATTCTGCTCTGAAGGAGCAAAAAAGCTGCTAGTTTATGATTACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCACAACAATAGCCGTAAGGTGGTGTTGGATTGGAAAATGAGATACCAAATTGCGTTAGGAACAGCAAGGGGACTAAATTACCTTCACGAGAAATGTAGAGATTGTATTATACATTGTGATGTGAAGCCAGAAAACATTCTCCTAGATGCTGAATTTTGTCCCAAGGTTGCAGACTTTGGCCTGGCTAAGCTTGTTGGAAGGGATTTCAGCAGGGTTCTCACAACCATGAGAGGAACAAGAGGTTATCTTGCTCCAGAGTGGATTTCTGGGGTGCCTATCACTGCCAAAGCTGATGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCCGGTAGGAGGAACTCTGAGCCATCAGAAGATGGCCAATTTACCTTCTTTCCGACCTTTGCGGCAAATGTTGTTGTCCAAGGTGGCCCTGTTGTTAGCCTTTTGGACCCTGGTTTGGAGGGCAATGCTGAGATTGAGGAGGTGACTCGAACAATAAAAGTTGCTTCATGGTGTGTCCAAGACAATGAGGCTCACCGGCCAAGCATGGCTCAGGTGGTTCAAATCCTTGAGGGGATCTTAGAGGTGAATATGCCTCCAATTCCAAGATCCCTTCAAGTGTTTGTTGACAACCAGGAGAATCTAGTCTTCTACACCGACTCAAACTCCACACACAGTTCACAGGAGAAGAGCAACGTTTCTACGACCTCCTCCTCTCAAGCCAGAAGCAACATCTCTTCAGCAAGCTCCAAGTCCATGGGAGGAGAAAATTAG 2511 0.4508 MKKNPCFCITLLTLFFSLFTHNSLAALTTVSTNQTLTGDQTLVSEGEIFELGFFKPGNSTNYYIGIWYKKVTKQTIVWVANRDNPVSDKNTATLTISAGNLVLLDGSSKQVWSTNTSSSSRSGSVLIAVLLDSGNLVLRDRHIGASASEPLWQSFDHPTDTWLPGGKIKLDNKTKQPQYLTSWKNNEDPATGLFSLELDPKGTTSYLILWNKSEHYWDSGPWNGHIFSLVPEMRANFLYNFTFVSNDNESYFTYSMYNSSIISRFVMDVSGQIKQLSWLETAQQWNLFWSQPRQQCEVYAFCGAFARCTENSMPYCNCLPGFEPKSLSDWNLEDHSGGCERRTNLQCENLNPSKGDKDRFLAILNMALPKHAQSVGSGEAGECESTCLNNCSCTAYAYNSRGCFIWIGNLLNLQQLSLDDSSGETLYLKLAASEFRDDKSSKGTVIGVAVGLVVGIGVLLAILLFFVIRRRKRMVGIGKPVEGTLVAFGYRDLQNATRNFSEKLGGGGFGSVFKGTLGDSSVVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGAKKLLVYDYMPNGSLDFHLFHNNSRKVVLDWKMRYQIALGTARGLNYLHEKCRDCIIHCDVKPENILLDAEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVPITAKADVYSYGMMLFEFVSGRRNSEPSEDGQFTFFPTFAANVVVQGGPVVSLLDPGLEGNAEIEEVTRTIKVASWCVQDNEAHRPSMAQVVQILEGILEVNMPPIPRSLQVFVDNQENLVFYTDSNSTHSSQEKSNVSTTSSSQARSNISSASSKSMGGEN* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2799 836 SMART blect_4 33 158 IPR001480 -
Vra5g2799 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 223 IPR036426 -
Vra5g2799 836 Gene3D - 24 156 IPR036426 -
Vra5g2799 836 CDD STKc_IRAK 504 772 - -
Vra5g2799 836 PIRSF SRK 2 821 IPR024171 GO:0004674
Vra5g2799 836 CDD B_lectin 33 158 IPR001480 -
Vra5g2799 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vra5g2799 836 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Vra5g2799 836 Gene3D Phosphorylase Kinase; domain 1 467 572 - -
Vra5g2799 836 CDD PAN_AP_plant 343 431 - -
Vra5g2799 836 SUPERFAMILY Protein kinase-like (PK-like) 484 796 IPR011009 -
Vra5g2799 836 Pfam Protein kinase domain 501 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2799 836 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vra5g2799 836 ProSiteProfiles Bulb-type lectin domain profile. 27 151 IPR001480 -
Vra5g2799 836 Gene3D Transferase(Phosphotransferase) domain 1 573 779 - -
Vra5g2799 836 MobiDBLite consensus disorder prediction 799 836 - -
Vra5g2799 836 SMART ntp_6 355 430 IPR003609 -
Vra5g2799 836 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 5 800 - -
Vra5g2799 836 Pfam D-mannose binding lectin 75 184 IPR001480 -
Vra5g2799 836 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 5 800 - -
Vra5g2799 836 ProSiteProfiles Protein kinase domain profile. 498 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2799 836 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Vra5g2799 836 SMART serkin_6 498 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2799 836 Pfam PAN-like domain 355 412 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2799 Vra-Chr5 35429500 35432516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2799 454 779 Receptor kinase-like Gene Family AT5G20050 41.667 7.64e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra5g2799 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2799 - - gmx:100810583 1258.82