Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2797 ATGAAGAACTGCGAGCTCTGCAAGGTTCCGGCTCGGACCTTCTGCGAGTCTGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACCCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGGGGAACCGCCGAACAAGGTCAGGAGAGCCAAGGAGGCAATGACGACGACTTAGACACAGACGAAGATGACTACGACGACGATGATGAGACCGACGACGAGGTCGCCGCCGACGAAGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGCGCCTCCGCCACCTGCTCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACAACGCCTACGAGGATGTTTCGACCACATTGAAACGACGTCGTGAGGACAATGATTCCGAGTGTTCGAATTCGAACAATTGGGGTTGTAAACTGAGCGAAGTGGAGAGAGGAGGTTGGTTGCTTCGGTTGCGACGAACCACCGCTGAAGATGACGGTCTTGCTGTCGAGCGACGAAGTGGTAGGATGGTGGCTCCCTACGGTTGTGGTGATGATGATAGAGTCTTTGAAAACGTTTGA 666 0.5901 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSPTPWKASGAALGNTVSLCERCAGGTAEQGQESQGGNDDDLDTDEDDYDDDDETDDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVSRCNNAYEDVSTTLKRRREDNDSECSNSNNWGCKLSEVERGGWLLRLRRTTAEDDGLAVERRSGRMVAPYGCGDDDRVFENV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2797 221 MobiDBLite consensus disorder prediction 77 143 - -
Vra5g2797 221 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 215 - -
Vra5g2797 221 CDD Bbox1_BBX-like 4 45 - -
Vra5g2797 221 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vra5g2797 221 MobiDBLite consensus disorder prediction 85 113 - -
Vra5g2797 221 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Vra5g2797 221 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vra5g2797 221 PANTHER - 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2797 Vra-Chr5 35372026 35373388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2797 2 128 C2C2-CO-like Transcription Factor Family AT5G54470 51.880 3.00e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g2797 zf-B_box 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2797 - - gmx:100801024 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2797 5 35372026 35373388 Vra5g2797 5 35372026 35373388 ECH