Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2796 ATGAGAAGTGAAGAGGTTTTGTCCTTCTCCTTTCTTTTTCTCTGCCTGCCAATATGCTTCCAGATATGTTTGGGTGGAGATACTCTGAAGGCTAACCAGAACATAACTCAGGACTCCAATGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTGCTGAAAAAAGTGGAGGGAAATACCTGGGCATTTGGTATCACGGCTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGATCTTCCTGTTCCCGATTCCACTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAATATGCATTCAGAAGCCTCTGGTCTTCTGAACTTGCAGCATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAACCTAGTACTAAAAAAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCAAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCGCGAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTGGGCACTTGATGAACTTGACACAGAAGCGTCTTCCCAGGTCGTATTTAATTTGTTGAACAACGACATCTGGAGTACTAAAACGTACAATTATTCTAACAAAACACTCTTCGTATCACAACCTTACATGTACTATAAATCAAGGCTTTTGATGAATTCTAGAGGGGAGATAGTGTTTTTCGAGTGGGATGAGGAAGACTCAAATTGGACTACGATATGGTCTGGGCCAGAGAACAAGTGTGACATACCTGATTATTGCGGGAGCTTCGGCCTATGTAGCAGAGATAACCTCATTCCGTGCAAATGTTTGCCAGGATTCAGTTCTATTCAAGGTTTTCCTTCTGATCGAGAATCGGAGTCCCAAGGATGTCAGAGAAAATCAACGACGTGTACCAGTACCAACGAAGACGTGATGTTCCTGAACTTAACCAACATAAAAGTGGCCGACCCAGACCAAGAAATTCCTACTAAAACAGAAGGAGAATGTCAATCCATGTGCATCAAAATGTGTCCCCAATCACAGTGTCAAGCATATTCATTTAATAGTTCCACGTATGGTGATCGTGGTTCATACTCGTGCAATATCTGGACGCGGCCTTTACCTTCTCTTGTCGAGAACTACCTGCGCGGTCGTGATCTTTCTATCTTGGTTAAGACATCAGATATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGCCATTCCTTATCCCCTAAGCACTGGGTCAAACTGCGGAGACCCCATGTACAACTACTTCAATTGCAACAAACCCACTGGCAAAGTTACTTTTATGATTCCCGGACGAATATCATATTCATACCCACTAACTTGGATCGATGAAGATTCCAGAATGTTTTCCATTCAAACAGACGATTTCTATTACTTCAATTACAGTTTCAGCAGTCAGAATAGCACTGATTTTCCGTTTAAGGTAGCTGAGTACATTGAAGATGCCGTAATAAAAATCAATTGGCTACCAGCGCCAGAACCCCCCTGTAGTCAGCTTACAGACTGCATTAGTTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCTTTGTGATTCAAACTATAATTGGAATAACACATTAATGAGCTGCACCCAAGAGCAATCAGGAAATCACTCAACTCGACTAGAATTGATTCTTTTGGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCATTTGGCATCGTGTGGAGAAAGAAAAAATCCCTTAAACATGATCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTTGCAGCTACAGATAATTTTTCGGATTCTAACAAGCTCGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGAAATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATTAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGCTTGGATTCATTTATATTTGACCGTAGTCGAACTATACTGTTGGATTGGCCAATGCGGTTTGAGATAATAGTAGGCATTGCACGAGGCATGTTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGACTCCAAAGATATCTGATTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACAGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGGGTGGTCCTACTGGAGATTCTTAGTGGAAAAAGGAACACAGGATTCTATGAGTCTAATCAAATTTCTAGCCTTTTGGGTTATGCATGGAACTTATGGTCAGAGAACAAGATACTGGATTTAATGGATTCTAGTCTTGGTGAATCATACAACGAAAATCAATTTTTCAAATGTGCAGTTATTGGATTATTATGTATACAAGATGAACCAAGTAATCGACCCAGTATGTCAAATGTTTTGTACATGCTTGACGTAGAGACAACAACCATGCCAATTCCCACCCATCCAACATTTTTTATGAACAAGCGTTATTCAAGTTCAGCTTCTTCTTCTAGTAAACCAGAAACAATTCTGCAATTTGATAGCAGTTACGAACAAGGTCGATAG 2979 0.4193 MRSEEVLSFSFLFLCLPICFQICLGGDTLKANQNITQDSNGNLVSSNATFELGFFSPAEKSGGKYLGIWYHGLEPQTVVWVANRDLPVPDSTGVFRIAEDGNLVVEYAFRSLWSSELAASSSSNRTLQLLDSGNLVLKKDDSEATYLWESFKNPTDTFLPGMKMDATLSLTCWRDSANPAPGNFTFKLTQKAETRSFVVQYQSQIHWALDELDTEASSQVVFNLLNNDIWSTKTYNYSNKTLFVSQPYMYYKSRLLMNSRGEIVFFEWDEEDSNWTTIWSGPENKCDIPDYCGSFGLCSRDNLIPCKCLPGFSSIQGFPSDRESESQGCQRKSTTCTSTNEDVMFLNLTNIKVADPDQEIPTKTEGECQSMCIKMCPQSQCQAYSFNSSTYGDRGSYSCNIWTRPLPSLVENYLRGRDLSILVKTSDIAPTAKSCEPCGTYAIPYPLSTGSNCGDPMYNYFNCNKPTGKVTFMIPGRISYSYPLTWIDEDSRMFSIQTDDFYYFNYSFSSQNSTDFPFKVAEYIEDAVIKINWLPAPEPPCSQLTDCISWPNSTCRATGEGGSRCLCDSNYNWNNTLMSCTQEQSGNHSTRLELILLATLGSLAAVTCIIAFGIVWRKKKSLKHDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMTPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKRNTGFYESNQISSLLGYAWNLWSENKILDLMDSSLGESYNENQFFKCAVIGLLCIQDEPSNRPSMSNVLYMLDVETTTMPIPTHPTFFMNKRYSSSASSSSKPETILQFDSSYEQGR* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2796 992 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 169 IPR036426 -
Vra5g2796 992 CDD STKc_IRAK 682 948 - -
Vra5g2796 992 MobiDBLite consensus disorder prediction 969 992 - -
Vra5g2796 992 CDD B_lectin 39 154 IPR001480 -
Vra5g2796 992 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 990 - -
Vra5g2796 992 Pfam Protein tyrosine and serine/threonine kinase 679 944 IPR001245 GO:0004672|GO:0006468
Vra5g2796 992 Gene3D Phosphorylase Kinase; domain 1 650 751 - -
Vra5g2796 992 SMART ntp_6 340 425 IPR003609 -
Vra5g2796 992 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Vra5g2796 992 Pfam S-locus glycoprotein domain 248 313 IPR000858 GO:0048544
Vra5g2796 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Vra5g2796 992 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2796 992 SUPERFAMILY Protein kinase-like (PK-like) 661 976 IPR011009 -
Vra5g2796 992 Pfam D-mannose binding lectin 77 166 IPR001480 -
Vra5g2796 992 SMART blect_4 34 154 IPR001480 -
Vra5g2796 992 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 990 - -
Vra5g2796 992 ProSiteProfiles Protein kinase domain profile. 676 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2796 992 Gene3D Transferase(Phosphotransferase) domain 1 752 955 - -
Vra5g2796 992 ProSiteProfiles PAN/Apple domain profile. 336 426 IPR003609 -
Vra5g2796 992 Gene3D - 22 152 IPR036426 -
Vra5g2796 992 CDD PAN_AP_plant 335 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2796 Vra-Chr5 35334415 35338308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2796 651 964 Receptor kinase-like Gene Family AT4G05200 54.459 7.19e-121 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2796 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2796 - - var:108332879 1794.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2796 5 35334415 35338308 Vra5g2796 5 35334415 35338308 ECH