Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2795 ATGAGAAGTGAAGGGGTTGTGTTGTTGTTCTCCCTTCTTCTTCTCTGGCTGCCGATATTCTTCGAAATATGTTTGGGTGGAGATACTCTGAAGGCTAACCAGAACATAACTCAGGACTCCAATGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTGCTGAAAAAAGTGGAGGGAAATACCTGGGTATTTGGTATCACGACTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGAACATCCTGTTCCAGATTCCGATGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAATATGCATTCAGAAGCCTCTGGTCTTCTGAACTTGCAACATCCTCGTCCTCTAACAGAACACTGCAGCTCCTAGATTCTGGGAACCTAGTACTAAAAAAGGATGACTCTGAAGCGACATACCTGTGGGAAAGCTTCCAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTGTTGGAGAGACTCCTCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAAAAGGCTGAGACACGGAGCTTCGTTGTGCAATATCAATCACAAATCCACTGGGCACTTGATGAACTTGACACAGAAGCGTCTTCCCAGGTCGTATTTAATTTGTTGAACAACGACATCTGGAGTACTAAAACGTACAATTATTCTAACAAAACACTCTTCGTATCACAACCTTACATGTACTATAAATCAAGGCTTTTGATGAATTCTAGAGGGGAGATAGTGTTTTTCGAGTGGGATGAGGAAGACTCAAATTGGACTACGATATGGTCTGGGCCAGAGAACAAGTGTGACATACCTGATTATTGCGGGAGCTTCGGCCTATGTAGCAGAGATAACCTCATTCCGTGCAAATGTTTGCCAGGATTCAGTTCTATTCAAGGTTTTCCTTCTGATCGAGAATCGGAGTCCCAAGGATGTCAGAGAAAATCAACGACGTGTACCAGTACCAACGAAGACGTGATGTTCCTGAACTTAACCAACATAAAAGTGGCCGACCCAGACCAAGAAATTCCTACTAAAACAGAAGGAGAATGTCAATCCATGTGCATCAAAATGTGTCCCCAATCACAGTGTCAAGCATATTCATTTAATAGTTCCACGTATGGTGATCGTGGTTCATACTCGTGCAATATCTGGACGCGGCCTTTACCTTCTCTTGTCGAGAACTACCTGCGCGGTCGTGATCTTTCTATCTTGGTTAAGACATCAGATATAGCACCAACTGCTAAATCGTGTGAACCTTGCGGCACATATGCCATTCCTTATCCCCTAAGCACTGGGTCAAACTGCGGAGACCCCATGTACAACTACTTCAATTGCAACAAACCCACTGGCAAAGTTACTTTTATGATTCCCGGACGAATATCATATTCATACCCACTAACTTGGATCGATGAAGATTCCAGAATGTTTTCCATTCAAACAGACGATTTCTATTACTTCAATTACAGTTTCAGCAGTCAGAATAGCACTGATTTTCCGTTTAAGGTAGCTGAGTACATTGAAGATGCCGTAATAAAAATCAATTGGCTACCAGCGCCAGAACCCCCCTGTAGTCAGCNTACAGACTGCATTAGTTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCTTTGTGATTCAAACTATAATTGGAATAACACATTAATGAGCTGCACCCAAGAGCAATCAGGAAATCACTCAACTCGACTAGAATTGATTCTCTTAGCAACTCTTGGTTCCCTGGCTGCTGTGACATGCATAATAGCATTTGGCATCGTGTGGAGAAAGAAAAAATCCCTTAAACATGATCGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTTCCCTTTTACACTTTTGCAAGCATTCTCGCAGCTACAGATAATTTTTCGGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAAAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATTAAAGGGGATGAAAAAATCTTACTTTATGAATACATGCCAAATAAGAGCTTGGATTCATTTATATTTGACCGGAGTCGAACTATACTGTTGGATTGGCCAATGCGGTTTGAGATAATAGTAGGCATTGCACGAGGCATGTTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACATGAAAACCAGCAACGTTCTCTTAGACGAGGAAATGAATCCAAAGATATCTGACTTTGGTCTTGCAAAAATATTTGGAGGAAAAGAAACTGAAGCAAGTACAGGGAGAGTGATGGGAACCTATGGATACATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGGGTGGTCCTACTGGAGATTCTTAGCGGAAAAAGGAACACAGGATTCTATGAGTCCAATCAAATTTCTAGCCTTTTGGGTTATGCATGGAACTTATGGTCAGAGAACAAGATACTGGATTTAATGGATTCTAGTCTTGGTGAATCATGCAACGAAAATCAATTTTTCAAATGTGCAGTTGTTGGATTATTATGCATACAAGATGAACCAAGTAATCGACCCAGTATGTCAAATGTTTTGTACATGCTTGACGTAGAGACAACAATCATGCCAATTCCCACCCAGCCAACATTTTTTATGAACAAGCGTTATTCAAGTTCAGCTTCTTCTTCTAGCAAACCAGAAATAAGTCTGCAATTTGACAGCAGTTATGAACAAGGTCGATAG 2982 0.4205 MRSEGVVLLFSLLLLWLPIFFEICLGGDTLKANQNITQDSNGNLVSSNATFELGFFSPAEKSGGKYLGIWYHDLEPQTVVWVANREHPVPDSDGVFRIAEDGNLVVEYAFRSLWSSELATSSSSNRTLQLLDSGNLVLKKDDSEATYLWESFQNPTDTFLPGMKMDATLSLTCWRDSSNPAPGNFTFKLTQKAETRSFVVQYQSQIHWALDELDTEASSQVVFNLLNNDIWSTKTYNYSNKTLFVSQPYMYYKSRLLMNSRGEIVFFEWDEEDSNWTTIWSGPENKCDIPDYCGSFGLCSRDNLIPCKCLPGFSSIQGFPSDRESESQGCQRKSTTCTSTNEDVMFLNLTNIKVADPDQEIPTKTEGECQSMCIKMCPQSQCQAYSFNSSTYGDRGSYSCNIWTRPLPSLVENYLRGRDLSILVKTSDIAPTAKSCEPCGTYAIPYPLSTGSNCGDPMYNYFNCNKPTGKVTFMIPGRISYSYPLTWIDEDSRMFSIQTDDFYYFNYSFSSQNSTDFPFKVAEYIEDAVIKINWLPAPEPPCSQXTDCISWPNSTCRATGEGGSRCLCDSNYNWNNTLMSCTQEQSGNHSTRLELILLATLGSLAAVTCIIAFGIVWRKKKSLKHDRASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDMKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTGRVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKRNTGFYESNQISSLLGYAWNLWSENKILDLMDSSLGESCNENQFFKCAVVGLLCIQDEPSNRPSMSNVLYMLDVETTIMPIPTQPTFFMNKRYSSSASSSSKPEISLQFDSSYEQGR* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2795 993 Pfam S-locus glycoprotein domain 248 314 IPR000858 GO:0048544
Vra5g2795 993 Pfam Protein tyrosine and serine/threonine kinase 680 945 IPR001245 GO:0004672|GO:0006468
Vra5g2795 993 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 174 IPR036426 -
Vra5g2795 993 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Vra5g2795 993 SMART blect_4 35 155 IPR001480 -
Vra5g2795 993 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 991 - -
Vra5g2795 993 SMART serkin_6 677 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2795 993 ProSiteProfiles PAN/Apple domain profile. 337 427 IPR003609 -
Vra5g2795 993 CDD B_lectin 40 155 IPR001480 -
Vra5g2795 993 Gene3D - 23 153 IPR036426 -
Vra5g2795 993 SUPERFAMILY Protein kinase-like (PK-like) 662 976 IPR011009 -
Vra5g2795 993 ProSiteProfiles Protein kinase domain profile. 677 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2795 993 CDD PAN_AP_plant 336 424 - -
Vra5g2795 993 CDD STKc_IRAK 683 949 - -
Vra5g2795 993 SMART ntp_6 341 426 IPR003609 -
Vra5g2795 993 MobiDBLite consensus disorder prediction 971 993 - -
Vra5g2795 993 Gene3D Phosphorylase Kinase; domain 1 651 752 - -
Vra5g2795 993 Pfam D-mannose binding lectin 78 167 IPR001480 -
Vra5g2795 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Vra5g2795 993 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 991 - -
Vra5g2795 993 Gene3D Transferase(Phosphotransferase) domain 1 753 955 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2795 Vra-Chr5 35316959 35322623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2795 667 968 Receptor kinase-like Gene Family AT4G23140 55.519 2.57e-121 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2795 PK_Tyr_Ser-Thr 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2795 - - var:108332879 1794.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2795 5 35316959 35322623 Vra5g2795 5 35316959 35322623 ECH
Vra2g0970 2 9961109 9966191 Vra5g2795 5 35316959 35322623 PCT