Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2791 ATGCACATGTTAGCGAAAGCACATAGTAAGGGGGACGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTGATGATGCGGATAAACCAGTTCGCAAAGTTCCTGCCAAGGGATCAAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAATTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCGAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTTAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAGGAATCCTCCAAAGATTCTCCATTGGCGAATCATTCTGGTTCCTCAATGGCTGTGTCTGCAAATGAATCCATGGTTTCACTTAGTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACACGAGAACGGTGAAGATGGGAACAAAGCATGA 582 0.4691 MHMLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCDDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPLANHSGSSMAVSANESMVSLSNSKGGGAEEDVDMEPISLSLSVKHENGEDGNKA* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2791 193 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 179 - -
Vra5g2791 193 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Vra5g2791 193 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 MobiDBLite consensus disorder prediction 42 65 - -
Vra5g2791 193 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 MobiDBLite consensus disorder prediction 129 162 - -
Vra5g2791 193 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Vra5g2791 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 179 - -
Vra5g2791 193 MobiDBLite consensus disorder prediction 129 193 - -
Vra5g2791 193 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2791 Vra-Chr5 35264087 35265943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2791 10 127 AP2-EREBP Transcription Factor Family AT2G40350 63.934 7.65e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g2791 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2791 - K09286 gmx:100527471 332.798