Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2786 ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCATTTCCTTTCAAAACCCTAATACACTCTTTAACACACCTCAGAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCTCCTGTGGGGGACACCAACCAAAGACTCACCTCGTGGTTTCTCAGAGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTTATGAGCGTCACCGAGCTGGCCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTTCAAAGCAATAACGGGGTACCAAAGAGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGACCTCCTTCACTCAGAATCACAGTTCCGTTTTGTAGACCACACGTACCCCCTCTGGTCAATGTATCTATACATGAGGTTGGTTTACGTTTAGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAACGTTATAGGAAACACAGGACCGTTAACACCTGTGGAATTGAGCGATGAATCATCTAACTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTACGCTAAACCTTAGGGACGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCCCTTAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGACGAAGATTGTGACCTTAGTGCATCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGGCAGAGTTTGAATCCGACATAGGCCAGAAGATTGAAAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAGTGTTCCATTTTGTGATGAAACTATTAGGGAAGTTAAAGGTTTGTTAGATGAGCATGCCAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATGCAAGTCTGCCTTAA 1368 0.4437 MHVTSSHSHMKAELKGTSISFQNPNTLFNTPQNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPVELSDESSNFHFEAMLSLLNPTTLNLRDDEALVINCQNWLRYLSDDRKGSRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETIREVKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDASLP* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2786 455 PANTHER OS05G0500600 PROTEIN 11 446 - -
Vra5g2786 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 446 IPR005202 -
Vra5g2786 455 Pfam GRAS domain family 52 444 IPR005202 -
Vra5g2786 455 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2786 Vra-Chr5 35131001 35133520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2786 27 447 GRAS Transcription Factor Family AT3G49950 44.186 2.52e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra5g2786 GRAS 2.6e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2786 - - gmx:100805056 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2786 5 35131001 35133520 Vra5g2786 5 35131001 35133520 ECH