Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2784 ATGATAATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGATGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCCTAATCCCGCAACCCGCAGAGGCTCCAAAAGTCCTTGTCCCTAAAACCGAACCCTCTCAACCGTTCAAATTCTTTCCCCAATACCATCCTTCCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCGCAGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCGCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCTTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTGAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCATCTTCTTCCTTGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGGTCCTGGTTAACTCACCCGTGGCACAGACCATGCTATATTCTCAAGGTTTTTGTGTCTTCTCTTTGGAACAGTTGTCTCTCCTCAGAAAATTATCAGATAGGAGGCACCACCACCATAACCACCTTTCCTCCAAATCTACTTTCAACTAA 720 0.5389 MIMYSGDGSSLDPMFSGTSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQPAEAPKVLVPKTEPSQPFKFFPQYHPSPFLRLPQLRSAEQPQPKRQRLESPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSLPSFRQNSAVFVDLEKLNRSQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSDRRHHHHNHLSSKSTFN* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2784 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Vra5g2784 239 SMART finulus 106 155 IPR011598 GO:0046983
Vra5g2784 239 MobiDBLite consensus disorder prediction 88 116 - -
Vra5g2784 239 Gene3D - 104 169 IPR036638 GO:0046983
Vra5g2784 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 160 IPR036638 GO:0046983
Vra5g2784 239 PANTHER TRANSCRIPTION FACTOR BHLH117 97 235 - -
Vra5g2784 239 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 97 235 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2784 Vra-Chr5 35074004 35075139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2784 78 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 36.257 1.34e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g2784 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2784 - - aprc:113855910 293.123