Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2778 ATGGACATGAATTCCTCAACTGGTGCCTCCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTAGCCGGTGCTGACTTCATGGTTGCAGCAGACTCTGCAGGTTTTACTTGGGGGCCTCAAAATCACACCTTGAAGGGTCCTTCACATACCAGCTTGGAAATGGAATACTCACTGGATTCAACTGTTCTGGAAAATAGTCCTTCAAAGCGGTTAAAGACCGAGTCGTGTGCATCTGGCGCCAAGGCGTGTCGCGAAAAAATGCGAAGGGATAAACTGAATGATAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTCCAATTGAGAAATGAAACCGAAAGGCTTAAGGAAATGAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAGGTAAAACTGACAAATATACAGAACAGCTTCCTCCCTCAAGGCCCAGCTGCTAAAGGACAAGTTGGTACCCATAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 699 0.4506 MDMNSSTGASGWLYDYGFDIPVAGADFMVAADSAGFTWGPQNHTLKGPSHTSLEMEYSLDSTVLENSPSKRLKTESCASGAKACREKMRRDKLNDRFLELSSILEPGRPPKTDKVAILSDAARVVVQLRNETERLKEMNDELQGKVKELKAEKNELRDEKNMLKEEKEKLEQQVKLTNIQNSFLPQGPAAKGQVGTHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2778 232 Gene3D - 69 127 IPR036638 GO:0046983
Vra5g2778 232 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 232 - -
Vra5g2778 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Vra5g2778 232 PANTHER BHLH TRANSCRIPTION FACTOR 1 232 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vra5g2778 232 CDD bHLH_AtILR3_like 82 157 - -
Vra5g2778 232 Coils Coil 118 180 - -
Vra5g2778 232 SMART finulus 83 134 IPR011598 GO:0046983
Vra5g2778 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 128 180 - -
Vra5g2778 232 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Vra5g2778 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 152 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2778 Vra-Chr5 34999189 35001258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2778 35 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.502 1.04e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g2778 HLH 7.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2778 - - gmx:100806838 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2778 5 34999189 35001258 Vra5g2778 5 34999189 35001258 ECH