Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2773 ATGATATCTTTTACCAGCTTCGTCTGGAGGGGGGCTACAGCAATTTTGGTCTGGGGCATGGAACCGCTGTGTGAGTTTTGTTGGGCTATGATAGCAGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTGCACTCTGCGAATTCTCTGTCTCGCAGGCATTCGCGTTCTCTCCTTTGTGATAAGTGCTATTCCCAGCCAGCAGTGATACGTTGCATGGATCATAAGTTGTCCTCGTGTCAAAGTTGTGATTGGAACCCGACTGCTTGTTTTGCAGCGGGACATAGGCGCCTCACGTTGAATTGTTACAATGGTTGTCCTTCTTTGTCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGATAGTTCCTCACAAGCTGGCTGGGAATCTGTTAGCACTTTTCCAAAAAGTGATAGCTGCACTAGCCTGGAGCAACCTGATCACAATGGTGGTTCCTTTAGTTTGGTGATTGAGAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAACCTCACATCATTCCTTCAAATCCAAATTACACACCGTACTGCAAAGAAGAAGGATTTTTCCTAGCTCAGGACTCAAACCAGCCAAAGACGCAGGAGTGTACTGATCGAGGAACTGGTGATGGGAATGGACTCTCTGAAGGTCTCAATGTGGACAGAGCTCCAATAAATTTTGAAAGTGCTGAAGAAATATTTGGCTGTTCACAAGCTGCCACTAGATACCCTCTTGAAGATGGAGGAGTGGACTGTCTATTGATGGATAAAAAATTATCAGTCACCGAATCTAGTTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCAATTCAACAAGATTGTGTGGCTTTTCAGTCATCTGGGACACGTGGATCAGTTAGTATGTTGCAGGTTATGAACAGTAACACAAACTGTGCACTTATGAATCCTAGCAGCACTGGAAACATCAGTCTGAGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACGGCGGGATATCGCCAATGTTTCTGCCGGGTGAAATCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAGGCTAAAATGAGATACAATCAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCCGATACAAGAAAACGTGTGAAAGGCCTACATTTGCTTCCTTGCTTTAAGAGGAGATGTACATAG 1311 0.4416 MISFTSFVWRGATAILVWGMEPLCEFCWAMIAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCYSQPAVIRCMDHKLSSCQSCDWNPTACFAAGHRRLTLNCYNGCPSLSEFSRMWSFVFDDSSSQAGWESVSTFPKSDSCTSLEQPDHNGGSFSLVIEKLDEIESCVRYEPWMGQPHIIPSNPNYTPYCKEEGFFLAQDSNQPKTQECTDRGTGDGNGLSEGLNVDRAPINFESAEEIFGCSQAATRYPLEDGGVDCLLMDKKLSVTESSSLIESALEASSSIQQDCVAFQSSGTRGSVSMLQVMNSNTNCALMNPSSTGNISLRFPQGQVHSSIPLQLGNIVGENSSTEYQDGGISPMFLPGEIPWESNLEGTCPQARDKAKMRYNQKKKTRTFGKQIRYASRKARADTRKRVKGLHLLPCFKRRCT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2773 436 Pfam CCT motif 387 424 IPR010402 GO:0005515
Vra5g2773 436 ProSiteProfiles CCT domain profile. 387 429 IPR010402 GO:0005515
Vra5g2773 436 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 21 424 - -
Vra5g2773 436 MobiDBLite consensus disorder prediction 209 231 - -
Vra5g2773 436 CDD Bbox1_BBX-like 23 66 - -
Vra5g2773 436 SMART bboxneu5 19 66 IPR000315 GO:0008270
Vra5g2773 436 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 21 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2773 Vra-Chr5 34939795 34944288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2773 20 424 C2C2-CO-like Transcription Factor Family AT3G21880 41.667 1.68e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g2773 CCT 6.4e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2773 - - vra:106761521 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2773 5 34939795 34944288 Vra5g2773 5 34939795 34944288 ECH