Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2767 ATGAAGGTTGCTATTGTCACAAGAGCAAACCAATTTTTCATTGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAAGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTATCTGTTACTGGGTGGGAACTAGTTGATGGATTAGACATGGATGACTATCCAATAGTGACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGCAGAGCCACACCCTAACAAAATGCAAATCACTGTGAAATTTTCAGCTAAAAAGCTCAGCATTGAGGTTGACAGAACTGACACTATTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTTTCTGGAACTGAACTGGATGAAGATTTTAGAACCTTGAGTGAATATGGCATACGTGAATTTTCTGAGATTGTGGTCTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACAAGGAAGTTAACCTTCGTTGTACAAACTTCTTCTAGCTTGCTTAATGAAGCCACCATTCCACTGGAGATGAGAGATGCAAACACAGTGAACGAGTTGAAGCAGTTACTGATAAGCAGAAAGATTCTGCCTGGTGATGACTATTTGTTTATACATAGACAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGAACAGTTAGCACTGGTGGGTTTGCATGA 750 0.4093 MKVAIVTRANQFFIEVGAQETVVAIKKKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPAEPHPNKMQITVKFSAKKLSIEVDRTDTIRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIREFSEIVVFLKTMNRSRDEPPTRKLTFVVQTSSSLLNEATIPLEMRDANTVNELKQLLISRKILPGDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSTGGFA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2767 249 CDD Ubl_ubiquitin_like 181 239 - -
Vra5g2767 249 SUPERFAMILY Ubiquitin-like 73 160 IPR029071 -
Vra5g2767 249 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 247 - -
Vra5g2767 249 ProSiteProfiles Ubiquitin domain profile. 166 238 IPR000626 GO:0005515
Vra5g2767 249 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 247 - -
Vra5g2767 249 Gene3D - 153 244 - -
Vra5g2767 249 Pfam Ubiquitin family 8 73 IPR000626 GO:0005515
Vra5g2767 249 Pfam Ubiquitin family 83 153 IPR000626 GO:0005515
Vra5g2767 249 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Vra5g2767 249 SMART ubq_7 164 241 IPR000626 GO:0005515
Vra5g2767 249 SMART ubq_7 81 152 IPR000626 GO:0005515
Vra5g2767 249 SMART ubq_7 1 72 IPR000626 GO:0005515
Vra5g2767 249 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Vra5g2767 249 Gene3D - 1 73 - -
Vra5g2767 249 SUPERFAMILY Ubiquitin-like 176 241 IPR029071 -
Vra5g2767 249 Gene3D - 80 152 - -
Vra5g2767 249 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vra5g2767 249 CDD Ubl_ubiquitin_like 83 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2767 Vra-Chr5 34891547 34892743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2767 81 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.356 3.76e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2767 - - gmx:100781557 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2767 5 34891547 34892743 Vra5g2767 5 34891547 34892743 ECH