Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2765 ATGAGTAATTGGAACACCGGAGTGGAATTTCCTGTCGGTAACACCGCAGCTTCAACTTCCTCTTCTTTGGCTTTCAATGTCGGTAACACCACCACCACCACCACCAATTCTAACAAGAAATTCCAAGACTTTCCTGGGCTTGAGGACGATGATCTTGTCTCCACCGTGGTTCCCACTGTAATAGTTGTGCTAGAGGGTCGTTCCATCTGCCATCGCATCAGCCTCCATAACCATGGTAGCTACCAAAGTCTGGCCAAAGCCCTACGCGAAATGTTTGTGGAAAACGCTGGAGAGATTGATGATTTTGATCTTCCCAATGTGATTCCTGGCTACCTTATTGCCTATGAAGACATGGAGAACGATCTTCTTCTAGTCGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGTATAATTCCAACCAAGGCTAACTCAAGAAAAGGTTCAATAGGAGCAACATAA 474 0.4557 MSNWNTGVEFPVGNTAASTSSSLAFNVGNTTTTTTNSNKKFQDFPGLEDDDLVSTVVPTVIVVLEGRSICHRISLHNHGSYQSLAKALREMFVENAGEIDDFDLPNVIPGYLIAYEDMENDLLLVGDLSWKDFVRVAKRIRIIPTKANSRKGSIGAT* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2765 157 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 152 IPR003311 GO:0005634|GO:0006355
Vra5g2765 157 ProSiteProfiles PB1 domain profile. 57 147 IPR000270 GO:0005515
Vra5g2765 157 PANTHER AUXIN-RESPONSIVE PROTEIN IAA33 26 152 - -
Vra5g2765 157 Gene3D - 54 156 - -
Vra5g2765 157 Pfam AUX/IAA family 49 144 IPR033389 -
Vra5g2765 157 SUPERFAMILY CAD & PB1 domains 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2765 Vra-Chr5 34883080 34884347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2765 60 145 B3 DNA Binding Superfamily AT2G46530 32.558 1.94e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra5g2765 AUX_IAA 1.2e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2765 - - vra:106766495 201.83