Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2755 ATGCTTTCGATCATATATAACAAGTCTTCAAAACTGTTGCAACACGACAAGCTTTCACACATTAAGTTTCGTGTTGAGATGGAGGTGATGTGGGTCACAAGTCATGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCAGACGCAGGCAGTGGTGGGAAGGACAAGAACTATTGTCACAAACTCTTCTACTTCTTCGACACCGAGAGTTTTCAGAGTTGGAGCACTGTTCAGTCTTGATTCTATAATTGGAAGATCGGCTGAACCTGCAATCGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTTGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCTTTGCAGTTAATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGATTTGGTTGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTGGCAAAAAAACGTTCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGGGCACCCAGGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAGTCAAGGGTCTTCGTTTTGCACGTTAATCCTGAAACTGGTTTGAGCATTTTTTCTATTGCTCAGAAGCTGGGAATGATGGACAGTGGCTATGTATGGATTGCAACAGATTCTCTTGCTTCAGCACTTGATTCATTAGAGCCAATTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTGATGAAAAGAAGAATTTCCTTTCCAGAATGAAGAGACTAAAAAACAAGGAGACTCCAAGCTTCAATTCCTATGCAGTGTATGCATATGATACAGTTTGGTTAGTAGCCCGTGCTCTTGATACTTTTTTAAAAGAAGGTGGTGTGGTATCTTTTTCCTCTGACCCTAATTTAAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAGTTTTGGGAACCAACTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATAGGTGGATCAGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACAAGCAGCCAGCAACTATACGGTGTAATTTGGCCTGGAGAAACTGCAGTTAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGACAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACCTTGCTAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCCAGCCCTTCACTGCTGAAATGTGGTGTGTTACTGGTGCCTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAAACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTTCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCAATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCCTGATCTCAAGCAATCAACCCATTGGAATTCAAGAAGGGTCGTTTGCACGAAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATACATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTAGCTGTTGTTGATGAGCTTCCTTATATTGAAATACTAATGTCAAATACCAACTGCAAGTTCAGAACCGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCTCTTGCCGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGAGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAATGATGTTAATATAAACAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTGTTTGTGGCATTGCATGTTTCCTTGCTTTGATTGCATTCTTCATAAGAGTGCTATTTCAGTACACAAAATTCAGCCCAGAACCTGAACAACATGATGAGGAAAATTCGCCAGATAGGCCTAAAGGTAAAGGGCCTTTCGGAACTACTTCTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTCAGATGGCCAATCTTCTTCATCCGCCTAA 2919 0.4149 MLSIIYNKSSKLLQHDKLSHIKFRVEMEVMWVTSHGRIFVGRVLFLLVLFLWIQTQAVVGRTRTIVTNSSTSSTPRVFRVGALFSLDSIIGRSAEPAIVAAFEDVNADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRSKISYKAAFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMDSGYVWIATDSLASALDSLEPIDPKILNLLQGVLALRHHTPDTDEKKNFLSRMKRLKNKETPSFNSYAVYAYDTVWLVARALDTFLKEGGVVSFSSDPNLSDTNGSTLHLESLHVFDEGPTFLQTVLGTNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAVKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRQYILFGPGDRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLQPFTAEMWCVTGAFFILVGTVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQENDVNINKLSLSSFWGLFLVCGIACFLALIAFFIRVLFQYTKFSPEPEQHDEENSPDRPKGKGPFGTTSSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQSSSSA* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2755 972 Pfam Bacterial extracellular solute-binding proteins, family 3 570 855 IPR001638 -
Vra5g2755 972 Gene3D - 96 441 - -
Vra5g2755 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 91 107 - -
Vra5g2755 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 151 179 - -
Vra5g2755 972 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 364 376 - -
Vra5g2755 972 PANTHER GLUTAMATE RECEPTOR 3.4 66 955 - -
Vra5g2755 972 MobiDBLite consensus disorder prediction 952 972 - -
Vra5g2755 972 Gene3D - 624 744 - -
Vra5g2755 972 Gene3D - 193 466 - -
Vra5g2755 972 Gene3D - 508 623 - -
Vra5g2755 972 Coils Coil 940 960 - -
Vra5g2755 972 PIRSF IGluLR_plant 38 972 IPR017103 -
Vra5g2755 972 Gene3D - 745 858 - -
Vra5g2755 972 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 66 955 - -
Vra5g2755 972 SUPERFAMILY Periplasmic binding protein-like II 489 855 - -
Vra5g2755 972 CDD GluR_Plant 511 854 - -
Vra5g2755 972 SMART GluR_14 514 856 IPR001320 GO:0015276|GO:0016020
Vra5g2755 972 CDD PBP1_GABAb_receptor_plant 79 470 IPR044440 -
Vra5g2755 972 SUPERFAMILY Periplasmic binding protein-like I 73 505 IPR028082 -
Vra5g2755 972 Pfam Receptor family ligand binding region 95 450 IPR001828 -
Vra5g2755 972 MobiDBLite consensus disorder prediction 908 931 - -
Vra5g2755 972 Pfam Ligand-gated ion channel 856 887 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2755 Vra-Chr5 34744901 34749982 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2755 75 821 Ion Channels AT1G05200 68.942 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2755 K05387 - gmx:100799912 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2755 5 34744901 34749982 Vra5g2755 5 34744901 34749982 ECH
Vra5g2755 5 34744901 34749982 Vra2g0958 2 9738431 9743783 PCT