Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2754 ATGAAGAAATTCATGGTTTTGCTCCTTGTGACATGGATTTGGATATGTGGTGTTGCTTACAGCACAACGCCTGCCAGTGTGAACATTGGTGCGGTTTTTGCTTTCGATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCATTTCTGATATCAATAAGGACCCCAATGTTCTTAATGGAACCGACCTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATCGGAGCTTTTCAGGTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCCCAGTCATCCGCTGTAGCTCACACGATTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCGACCTTGTCCTCCCTTCAGTTTCCTTTCTTTATTCGTTCTACGCAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTTATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGACGACGATTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTTCCTTTGAGTATTAAGTTTGATCCGGATGAAATCACCAACTTACTCAATCAATCTAAATTGTTTGGTCCTCGTGTGTATGTTATTCATGCCAACCCTGATCCGAGCTTGAGAATTTTTTCTATTGCCCATAAACTTCAAATGATGGCCAAGGATTACGTGTGGCTTGTCACGGATTGGCTCTCAGCTACACTAGATTCATTATCTCCAGTGAATCGAACCTCTTTCAGTGCTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTTTGGATTCCCAAAAAAAGAGAGATTTTGTTTCTCGGTGGATGAAAAGGCAAAAAGATGGATTGACAAATACTAGTTTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAGTTCCTCAAAGTAAATAATTTTACCTTCATGCTTCATGATAACTATAAGTTATCTCATACAGAAGGAATTGGCGTTCAGCTTGACAAACTCAAAGTCTTCACTGGTGGATCTGATCTGGTTAAGATATTATTACAATCAAATTTTACTGGTGTGAGTGGTCAAGTTCTGTTTAATTCTGACAGAAATATTGTGAGTGGTGGTTATGATATTATCAATATCAATCAGTTGGGAATTTCTAGGGTTGGTTTTTGGTCTAATAATTCTGGATTTTCAGTTGTACCCCCTGAGACTCTTAAGAAAAGGGCACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCTGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGATAATACCAAGCCTCTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAACTAGTCATGAAATTCAGGGGTATTGCATCGATGTGTTCAAGAAAGCCCTAGAATTTATTCCATATGAAGTTCCCTATGTATTCAAGCCTTTCGGCAATGGTAAAGCAAATCCCAATTATGATGAACTTGTGAAAATGGTTGCTGATAATGTATATGATGCTGTTGTTGGAGACATTGCAATTGTGACAAACCGTACAAAGATTGTAGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAATCAGGATCAAGTGCTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACGGCTGCCTCATTTTTGGTGATTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATGTTCAGCCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCATAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTGTTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCCCCCATCACAGGAATTGAGAGCTTGATTGCAAGTAGCTGGCCTATAGGGTACCAAGTGGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATATTTCAAAATCAAGGCTTGTTTCATTAGGCTCCCCTGAGGAATATGCTTTAGCATTGCAGAAGGGACCTTCTGGTGGAGGGGTGGCAGCTATTGTAGATGAGCTTCCATATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATTGGACAGCCATTCGCAAGAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAGACTTTCTGAGAATGGGGATCTTCATAGGATACAGGAGAGGTGGTTCTGTAAAATGGGCTGTCCTGAAGAAAGGACAAGCAACTCGAAGCCTGACCAGCTTCACTTGATTAGCTTTTGGGGCCTGTATCTTTCATGTGGTGTTGTCTCTCTTGCTGCACTCGTTCTGTTTCTGCTGCGAATGATTCGGCAATACGCCCGCTTCAAAAAAAAGCAAAAGGATATTGCTTCTTCGTCCTCAGAACAACCATCAGGCAGCCACTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCATCTGACAATCATCACAACCCCAACTGA 2730 0.4092 MKKFMVLLLVTWIWICGVAYSTTPASVNIGAVFAFDSVIGRVAKEAMEMAISDINKDPNVLNGTDLNLIMKDAMCNAFLGSIGAFQVLEKGVAAIIGPQSSAVAHTISQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGVSALSDELEKRRLKISYKLPLSIKFDPDEITNLLNQSKLFGPRVYVIHANPDPSLRIFSIAHKLQMMAKDYVWLVTDWLSATLDSLSPVNRTSFSALQGVVGLRQHILDSQKKRDFVSRWMKRQKDGLTNTSLNSYGFSAYDTVWAIALSIDKFLKVNNFTFMLHDNYKLSHTEGIGVQLDKLKVFTGGSDLVKILLQSNFTGVSGQVLFNSDRNIVSGGYDIININQLGISRVGFWSNNSGFSVVPPETLKKRAHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPTSHEIQGYCIDVFKKALEFIPYEVPYVFKPFGNGKANPNYDELVKMVADNVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINKSGSSAWVFLKPFTADMWCATAASFLVIGIVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIASSWPIGYQVGSFAYSYLADNLYISKSRLVSLGSPEEYALALQKGPSGGGVAAIVDELPYVELFLSKETDFGIIGQPFARNSWGFAFQRESPFAFDMSTAILRLSENGDLHRIQERWFCKMGCPEERTSNSKPDQLHLISFWGLYLSCGVVSLAALVLFLLRMIRQYARFKKKQKDIASSSSEQPSGSHCSQVVVNFFNFIDEKEEAIKKMFTPSDNHHNPN* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2754 909 Gene3D - 576 704 - -
Vra5g2754 909 SUPERFAMILY Periplasmic binding protein-like I 23 456 IPR028082 -
Vra5g2754 909 Gene3D - 462 575 - -
Vra5g2754 909 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Vra5g2754 909 Gene3D - 753 812 - -
Vra5g2754 909 CDD GluR_Plant 463 805 - -
Vra5g2754 909 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Vra5g2754 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Vra5g2754 909 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Vra5g2754 909 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Vra5g2754 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Vra5g2754 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Vra5g2754 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Vra5g2754 909 Gene3D - 45 393 - -
Vra5g2754 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 805 IPR001638 -
Vra5g2754 909 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Vra5g2754 909 Gene3D - 142 418 - -
Vra5g2754 909 PANTHER GLUTAMATE RECEPTOR 3.7 10 907 - -
Vra5g2754 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 907 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2754 Vra-Chr5 34736047 34741370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2754 24 907 Ion Channels AT2G32400 57.047 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2754 K05387 - gmx:100796389 1584.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2754 5 34736047 34741370 Vra5g2754 5 34736047 34741370 ECH
Vra2g0958 2 9738431 9743783 Vra5g2754 5 34736047 34741370 PCT