Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2741 ATGGAGCTTCGTTCTCGTCGACGCCTTTCGAATCCCGCAGTGTCTGGGAATGAGCAGCAGCCTAAGGATGATACTGTGGTGGAAGACGAAACCAAGGGCCGGAGTAACAACAATAAAGACAAAGGTGTTTCCGTTATGTTGTCTGATTCGGATGTAGTTTCCGGTTCCGATTCCGATTCCGATTATGAAGATGAAGAATTGGCTGGGGGCTCGCTGCTTGACTTGAATAAATATCCATTTTCAACCATCAGTTTTTCTGACGGAGAAGATTATGGTTCTGATTCATCTGATGGTGACATACCTTTATTCAAGAAGGCAAAGGTTCCGGGGTCCAGAGAGAGAAGAAAGAGTACGAACACAGAAAAAGGAGAACCAAGTGATGTGGTGAGGGTGGTGGATCATGAATATTCAATGATTTCACCAGTATTGGTTCCATCTGGTTTTAAGGGAACTAAGAAGAGGAAGTATACTAAAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATCAGAAGATTTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAAGAACATTCTTCAAGTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAACCTGTTGCCTCCTATCAAAGGAACACTTGTCATATGTCCAGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTCTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGATTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATACTGTGGAAAATTATTTTTGCCAAGTAAGTTGATGTATCATCAAAGCTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGTTAAGAAGAAAAGAGAAGTTACTAAAGGGAAGACCAAGGAATGCGAAAGTAGCAAGATTTTGAAGGGTTCTATCAAGAAAAAGGGAGACAAAATGTGCATAGATATGGAAGATTCTGATGCTGTACCTGTACGTAGCGATAGGTCATTTCTCCATGCTGTTAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTGAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCGCTTATACGATTCTTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCCGTGCGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATACTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCGTTGAGAAANGATTGCCTAGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACACTGATGCATAATTATGCACATATATTTGATCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTTCAGGTTCAAGAAGTGCAGTTATGGCCAACAATGCTACTACCGTTGAACAAATTTGTGGTATATGCCACGAGCCAGTAGAAGATCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCCGTGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCTTGCTCCAAATTACTTACAGTTGATTTAACATCCAACAAGGATGCTGGGGATCAGGTTAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACGAGTACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCGTTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGAATGCTAGGGATGCTGCCATTCGGAGATTTACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACACGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATACAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTTTGAAACTCCAAGAGAAGAAAGAACTGGTGTTTGAAGGGACTATAGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTTACCTAA 2766 0.4132 MELRSRRRLSNPAVSGNEQQPKDDTVVEDETKGRSNNNKDKGVSVMLSDSDVVSGSDSDSDYEDEELAGGSLLDLNKYPFSTISFSDGEDYGSDSSDGDIPLFKKAKVPGSRERRKSTNTEKGEPSDVVRVVDHEYSMISPVLVPSGFKGTKKRKYTKKGSKGDSRPVLLWNAWEEEQEKWIDQHISEDFDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSSSRGGILADEMGMGKTIQAIALVLAKREFQDSCEPDQSIPCSSNLLPPIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQSYFCGPDAVRTEKQSKQVKKKREVTKGKTKECESSKILKGSIKKKGDKMCIDMEDSDAVPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRXDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMANNATTVEQICGICHEPVEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTSNKDAGDQVKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLNARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2741 921 CDD DEXDc_SHPRH-like 213 511 - -
Vra5g2741 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 919 IPR027417 -
Vra5g2741 921 SMART ring_2 667 707 IPR001841 -
Vra5g2741 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 568 IPR027417 -
Vra5g2741 921 MobiDBLite consensus disorder prediction 38 55 - -
Vra5g2741 921 SUPERFAMILY RING/U-box 663 714 - -
Vra5g2741 921 SMART helicmild6 782 865 IPR001650 -
Vra5g2741 921 ProSitePatterns Zinc finger RING-type signature. 682 691 IPR017907 -
Vra5g2741 921 MobiDBLite consensus disorder prediction 86 127 - -
Vra5g2741 921 SMART ultradead3 209 501 IPR014001 -
Vra5g2741 921 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 496 IPR014001 -
Vra5g2741 921 MobiDBLite consensus disorder prediction 22 37 - -
Vra5g2741 921 Gene3D - 590 919 IPR027417 -
Vra5g2741 921 Gene3D - 376 585 IPR038718 -
Vra5g2741 921 Gene3D - 180 349 IPR038718 -
Vra5g2741 921 Pfam SNF2-related domain 227 643 IPR000330 GO:0005524|GO:0140658
Vra5g2741 921 Pfam Helicase conserved C-terminal domain 751 865 IPR001650 -
Vra5g2741 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 737 IPR013083 -
Vra5g2741 921 PANTHER BNAA08G28190D PROTEIN 146 918 - -
Vra5g2741 921 MobiDBLite consensus disorder prediction 1 68 - -
Vra5g2741 921 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 911 IPR001650 -
Vra5g2741 921 CDD SF2_C_SNF 749 876 - -
Vra5g2741 921 ProSiteProfiles Zinc finger RING-type profile. 667 708 IPR001841 -
Vra5g2741 921 MobiDBLite consensus disorder prediction 106 127 - -
Vra5g2741 921 Pfam Zinc finger, C3HC4 type (RING finger) 667 707 IPR018957 GO:0046872
Vra5g2741 921 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 146 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2741 Vra-Chr5 34448097 34455572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2741 155 921 RAD5 or RAD16-like Gene Family AT1G05120 67.871 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra5g2741 SNF2_N 9.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2741 K15083 - gmx:100786366 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2741 5 34448097 34455572 Vra5g2741 5 34448097 34455572 ECH