Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2739 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACTGCCACCTCCGCCCACTCCTCCACCGTTGCCGCTGTCAAGACTGCAGAGTTATCCCCGTCAAACTTAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACGTAGTTGCCTACAAAGGTTGTGACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAATTCGCCGGCACGGTGGTCGGCTCAGCGAACCGACCATCGTGAACTACGTTCGACAAGTCCTGCAGGGGCTGGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGGGAAGATGGGGCCAAGATTGGTGATTTTGGGTGTGCTAAATTGTGGAATGAGTCTCCGGTGGCGGCGATCGGCGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAAGGGTACCCTGCTGATGTATGGGCGCTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGTTGTACCGCGTTGCATATTCCAATGAAGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTGAGGAGGAATCCTAAAGAGAGGTGGAACTGTAGTCAGCTTCTGAAGCATCCGTTTATTGGGGAATTCAATTCCAACGACAAGGAAATTCAGCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGAGCTTTTGGAATTCTGTGGAAGAGGCAGAGTGTGTCTCTGACCCTGGCAATGTGATTCAAATTAAAAGCTCAGATGAGTCTCCCAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCGGGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACGAGGGGAAGCGAAGCAGGGGCTTCAAGTTGTGAAGGGTTGGATTTGGATGTTGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGTGTTGAAGTTGGTAGTTTGAATTTTGAGGGAGGCGTTGATGAGATGGTTATCCCTTCAACATATGAGTTTTTATAA 1188 0.4705 MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNLEKLQREQRILSSLFSPHVVAYKGCDTTEENNTLWFNLFMEYMPFGTLSQEIRRHGGRLSEPTIVNYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCLRRNPKERWNCSQLLKHPFIGEFNSNDKEIQQSNSCSPTSILEQSFWNSVEEAECVSDPGNVIQIKSSDESPKGRIRRLALCSGDPIWELDDENWITTRGSEAGASSCEGLDLDVVNIRISDYFCDDYYKCSDVSVEVGSLNFEGGVDEMVIPSTYEFL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2739 395 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2739 395 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Vra5g2739 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vra5g2739 395 CDD STKc_MAPKKK 2 256 - -
Vra5g2739 395 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2739 395 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2739 395 SUPERFAMILY Protein kinase-like (PK-like) 4 288 IPR011009 -
Vra5g2739 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vra5g2739 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 357 - -
Vra5g2739 395 PANTHER MAP KINASE KINASE KINASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2739 Vra-Chr5 34442102 34443413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2739 1 286 MAP Kinase Kinase Kinase AT2G32510 54.882 4.05e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra5g2739 Pkinase 6.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2739 K20716 - pvu:PHAVU_005G115900g 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2739 5 34442102 34443413 Vra5g2739 5 34442102 34443413 ECH
Vra5g2739 5 34442102 34443413 Vra10g0952 10 15344099 15346242 ECH