Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2737 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAACCCAGTAGTTCTCAACTCTTTTCCTGAAGACTGTAACAACAACACTGGCCAACAAAAGTGGAAACTTCCTCCTAACATGGATGCCACAGTTAACAGAAACAGGTCTCCATCATCTTCTCCAAACACCAACCCCACCTCCACCTCCACCTCCACCATCCCCTTCCAAGTCAACCTTACCTCTGATAACAAAAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCGATCATGATCGTAAAAACTTTGCCTCTGCCTCCACCTCCACCTCTGCACCTCCCTCACTAGACCACCTTCTTCACACACATCATCATTCATCCACTCCTGCTATTTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTTACCACCAACACTGCTAGTGATCATTCCATGGTGGACGATGAGACGTCCACTAATTCCGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTCCAAGCTGAGCTTGAGAGGATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTAAGTATTATGCAAGAACAGAAGGAGGAGGAGGGTGAACAACAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGGGTCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGTTGATACTAATGAACCTTCTCATTCTTCCTCAGTGGGAAGAAGTCAGGATCTCTCAAAGTCGCCAATAAACAATGAGGTAGCATCCAAGGAATTTGACACCAAGAAGAATGGGAATGCTAGTGATGAAGGATTTGATCAAGACAAGAAGGAATTTGGAAGGGCAAATGAAAGAGAAGACAGTCCCTCAGAAGGGGTTGCCGCTAATACCAATGTTCCAAAGTTTAGTCCTCCAAGAAACGTTGATCAAGCTGAGGCTACCATGAGAAAGGCAAGGGTTTCTGTCAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGATCAATACTGATCACAACATATGAAGGGAATCACAATCACCCTTTGCCTCCAGCAGCTATTGCAATGGCACAAACAACTTCTGCAGCAGCTAGAATGCTGCTATCAGGATCTATGTCAAGTGCTGATGGCCTAATGAATGGAAACTTCCTCACAAGGACACTGCTCCCTTGCTCTTCTAGCATGGCCACTATCTCTGCATCAGCACCCTTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCAAAGCCCCCAAACCAATTCCAAATCCCTTTCCCTGGTGTCCCTCACAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTTGGGCAGGCACTCTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGACAGTTCCCAGTTGAGTAACCAATCTCAACGGCCACCACCGCACCTTGCTGACACGGTCAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACGGCAGCTTTGGCAGCAGCCATCACTTCTATCATTGGGGTTGCACAGCCAAACAACAACACCAGTACCAATAATAATGGCTCCACATCCAACAACACAAGCAATGCCAATATTACATCAAACAACAACAAATAA 1845 0.464 MARGGGLSIDSDPIGSFFPHNPVVLNSFPEDCNNNTGQQKWKLPPNMDATVNRNRSPSSSPNTNPTSTSTSTIPFQVNLTSDNKRPHIDEMDFFPNKTDHDRKNFASASTSTSAPPSLDHLLHTHHHSSTPAILELKVNTGLNLLTTNTASDHSMVDDETSTNSEEKRAKSEMVVLQAELERMKVENHRLRNMLDQVNTNYNALQMHLVSIMQEQKEEEGEQQVFDGKLDEEKQSGNGVLVPRQFMDLGLASNVDTNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGNASDEGFDQDKKEFGRANEREDSPSEGVAANTNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAIAMAQTTSAAARMLLSGSMSSADGLMNGNFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPHNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADSSQLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGVAQPNNNTSTNNNGSTSNNTSNANITSNNNK* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2737 614 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 70 607 IPR044810 GO:0003700
Vra5g2737 614 MobiDBLite consensus disorder prediction 83 104 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 252 338 - -
Vra5g2737 614 Pfam WRKY DNA -binding domain 359 416 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2737 614 MobiDBLite consensus disorder prediction 316 330 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 252 281 - -
Vra5g2737 614 Gene3D WRKY domain 342 419 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2737 614 Coils Coil 166 200 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 533 552 - -
Vra5g2737 614 ProSiteProfiles WRKY domain profile. 352 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2737 614 SMART WRKY_cls 357 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2737 614 MobiDBLite consensus disorder prediction 29 123 - -
Vra5g2737 614 SUPERFAMILY WRKY DNA-binding domain 350 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2737 614 PANTHER OS05G0567200 PROTEIN 70 607 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 533 555 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 29 82 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 586 614 - -
Vra5g2737 614 MobiDBLite consensus disorder prediction 282 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2737 Vra-Chr5 34422357 34425298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2737 138 582 WRKY Transcription Factor Family AT1G62300 54.526 1.24e-134 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g2737 WRKY 2.2e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2737 5 34422357 34425298 Vra5g2737 5 34422357 34425298 ECH
Vra5g2737 5 34422357 34425298 Vra10g0950 10 15323251 15326017 ECH