Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2731 ATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAACGCTATGGTCTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTTCTTTGGTTCAAAATCCTCCCAAAGAGAAATTGCAAGGTGTGAAGAATCCCAATGCAAAAAAGCCATCTTCCACAACCCACCGCTCTTCTTCCCTCCATGTCGATGAATCCCTTTTTTCCCATGTCTATGAGTATCTTCATGAAATGGAGATGCAGAAAAAGAGGAGACCAACTGTTGACTACATTGAGAAAGTTCAGAAATTGTTTACACCAACCATGAGAGCAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTTCCAGACACTCTTCATCTCTCTGTTTCATATATTGATAGGTTTTTGTCAGTTAATCCGGTGACTAAATCCAGACTTCAGTTGCTGGGTGTTTCCTCCATGCTTATTGCATCCAAATACGAGGAGATTGACCCACCTTGTGTGAACGATTTCTGCAGCATCACTGATTACACATATGACAAGGCAGAGGTTGTGAAGATGGAAGCCGACATACTGCAGTCACTGAAGTTTGAAATGGGAAATCCTACTGTGAACACTTTTCTCAGAAGGTTTGCTGATAATGAAATGACTCCAAATTCACAGATTGAATTTTTGGGCCGCTATCTTGCTGAGTTAAGTTTGTTGGATTATGATTGTTTGAGATTTTTGCCTTCTGTTGTAGCAGCATCTGCTCTATTTCTTTCTAGATTTATTATCTCGCCTGAAGTGCATCCATGGACTCCTTCTTTGAGTCAATGTTCTGGTTACAAATCAGCTGAATTGAAAGAATGTGTTTTAACTTTGCATGACCTGTACTTGTTACGAAAGGCAGCATCCTTCAAAGCTGTCCGGGATAAGTACAAGCAGCAAAAGTTTAAATGCGTTGCAAACCTGCCTTCCCCTCCTTATGTACCCAGTTGTTACTTTGAAGACCAGTGA 990 0.4172 METRAASKRKANAMVLVQKQHPKRHRVSLVQNPPKEKLQGVKNPNAKKPSSTTHRSSSLHVDESLFSHVYEYLHEMEMQKKRRPTVDYIEKVQKLFTPTMRAILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVTKSRLQLLGVSSMLIASKYEEIDPPCVNDFCSITDYTYDKAEVVKMEADILQSLKFEMGNPTVNTFLRRFADNEMTPNSQIEFLGRYLAELSLLDYDCLRFLPSVVAASALFLSRFIISPEVHPWTPSLSQCSGYKSAELKECVLTLHDLYLLRKAASFKAVRDKYKQQKFKCVANLPSPPYVPSCYFEDQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2731 329 PIRSF Cyclin_A_B_D_E 1 323 IPR039361 -
Vra5g2731 329 Gene3D - 82 197 - -
Vra5g2731 329 SMART Cyclin_C_2 199 318 IPR004367 -
Vra5g2731 329 Pfam Cyclin, C-terminal domain 199 317 IPR004367 -
Vra5g2731 329 SUPERFAMILY Cyclin-like 72 196 IPR036915 -
Vra5g2731 329 Pfam Cyclin, N-terminal domain 69 196 IPR006671 -
Vra5g2731 329 CDD CYCLIN 100 189 IPR013763 -
Vra5g2731 329 Gene3D - 69 314 - -
Vra5g2731 329 PANTHER CYCLINS 24 328 IPR039361 -
Vra5g2731 329 MobiDBLite consensus disorder prediction 44 59 - -
Vra5g2731 329 SMART cyclin_7 203 287 IPR013763 -
Vra5g2731 329 SMART cyclin_7 106 190 IPR013763 -
Vra5g2731 329 SUPERFAMILY Cyclin-like 199 320 IPR036915 -
Vra5g2731 329 MobiDBLite consensus disorder prediction 1 59 - -
Vra5g2731 329 CDD CYCLIN 199 286 IPR013763 -
Vra5g2731 329 ProSitePatterns Cyclins signature. 101 132 IPR006671 -
Vra5g2731 329 PANTHER CYCLIN-A3-1-RELATED 24 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2731 Vra-Chr5 34350188 34352166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2731 3 328 Core Cell Cycle Gene Families AT5G43080 53.982 5.86e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2731 K06627 - gmx:547779 510.76