Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2716 ATGGAGTCTGGTCCTCCTCCCAACGATCTCTGTTCAATCTGCCATGCCAACTTTCACATTCCTTGTCAAGCCAATTGCTCTCACTGGTTTTGTGCAAATTGCATCATGCTCGTCTGGCAGCACGCATCAGGAACAAGTTCTTGCAAATGCCCTCTCTGTCGCCGACCCATCACTCTCTTAATCCCCACCGAACACTCTCTCAGTCAGCGTCATGACCCTGAAGTTGCTCAGATTCTCTCCAAAATCCATGCTTATAACCGTGTCTTCGGTGGCCAACCCTCCTCTTTTTTTCAGAGAGTGCAAGATCTTCCTTTTCTGTTGCACAGGCTGCTTCGGGAGTTCCTAAACCCCCAAAGATCCCTTCCTCTTGTCATCCGTGCTCGTGTCTTTGTTGCTATGATAGCAAGTGTTGTATACATCCTGAGTCCAATTGACCTCATTCCTGAAGCTATATTAGGAATAGTTGGTCTCTTAGATGATGTCTTAATTGGGCTGATCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTTCTTTATCTCCGTCATGCGGGTTCCTGA 561 0.4706 MESGPPPNDLCSICHANFHIPCQANCSHWFCANCIMLVWQHASGTSSCKCPLCRRPITLLIPTEHSLSQRHDPEVAQILSKIHAYNRVFGGQPSSFFQRVQDLPFLLHRLLREFLNPQRSLPLVIRARVFVAMIASVVYILSPIDLIPEAILGIVGLLDDVLIGLICFLHVAALYRSVLYLRHAGS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2716 186 Pfam Protein of unknown function (DUF1232) 131 163 IPR010652 -
Vra5g2716 186 SUPERFAMILY RING/U-box 8 62 - -
Vra5g2716 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Vra5g2716 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Vra5g2716 186 PANTHER BNAC07G13660D PROTEIN 6 186 - -
Vra5g2716 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Vra5g2716 186 PANTHER UNCHARACTERIZED 6 186 IPR038896 GO:0061630
Vra5g2716 186 SMART ring_2 11 53 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2716 36 186 C3H Transcription Factor Family AT1G72175 67.550 9.51e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2716 K15707 - gmx:100306204 323.939