LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g2701	ATGGACACCTCTGGTAGTACATGTGAGATAGTGGAATCAAGGGAAGAAATAATATCTGAGATTAAAACGGTTGACAAACCTGAGAGTAGTTGTGCTCACAAATCAGGGAAAAGGTATTCCATTGAGAATGATATTAATCAGCTTTTCCAGGCCATTGATATTAAAAGTTCATCAAGAGGTCACAGTTCATCACGGTTACAAAAGAATGCTCTTAAAAGGCCAATAAAAGTCAGTTCATCTCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTGAAGCAGGCACTTAGAGGATTGTGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAAAGATTGTCTAAGCCATGCAGTTCATCTAGAGCATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCAGTGGTAGATGAGGGGAAAGGGAACTTGGTAGAAATTTCTCTAGTGCCAGAGATATCTACTGCACCTTCTAATAAATTGCCCGGTGTATCTATATCAAGTTCAATTGATCATTGTACTAGTCCTTTGGTTGATGCTAAAAAACCTAAAGAAATGATGATTGGATTTTCATCCCAAGATCAAATTGTTCCTCTGCCTTTAGAGGTTGAGGGTTACAAACCAGTCGTGGACATTGGAACACCAATACTTGCAAATTTGTCACCAGTTGCCTGTGCTAGTGATGTGGTGCCAGAGGTTCTAAGGGATCCTGTTTCCTTAAGCAAAGCTTCTCTCAGTTCTTCAATGCCAGGTAAGGGGCAGGAATCAAATTTACATCCTGCATCTTGTCCACTTAGCTCTAGCGCTGGCAATGGAGGGGATAAATCTATAAGCAGTAGTACATGTTTGTCAAAGCCAATATTCAATAACTTGAATTTCCTTAAGAAAAAAGTAAAGCAGGATTCTAGTTCTGCCTCAAGCTGCTCCACTCCATTTACAAGTAATTTGGACAAGGAGGTTGAAAATTCTGATTTGAAGCACGGAGTGAAAGAAAATGAGAAATTGTCTCCAAGCTGTTCAAATCATAGCATTGAAGTTAGCTCCAATAGTGTTGGTACAGATTCAAGCAAGCCTGGTTTCAGCTTGAACTGCAACAAGAGAACTAAGTTTCTGGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGCGACTTCTCTCAAAGTTCAAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGTCTAAGTGGTTCCAGCCGTGGTGGCCACAGACCTCACATGTCAAAACACATGAGATGGGAAGTTATCCGAGTTGTGCAGCAGCAACATGGTAATTTAAATTTGAAGCACTTTAAGCTGCTAAAGAGGCTTGGTAGTGGGGACATTGGAACTGTTTACCTTGCGGAACTAATTGGTACAAGCTGCCTTTTTGCGCTCAAAGTGATGGACAATGAATTTTTGTCGAGTCGGAAGAAAATGTTCAGGGCCCAAACTGAGAGAGAGATCCTTCAGATGCTGGACCATCCTTTTCTTCCCACGCTGTACTCCTATATTGCAACAGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGAGGAGATCTGCATGTGCTGCGACAGAGGCAGTCATACAAGAGTTTCTCGGAACAAGCAACAAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCATATGCTGGGAGTTGTGTATCGAGACCTAAAGCCGGAAAATATCCTAGTACGAGAAGATGGTCATATTATGCTGACAGATTTTGATTTGTCACTCAGGTGTTCCGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACAGATGCCACGAAGAAGACCTGTTCTGAAGCTAGCTGCATACACCCTTTCTGTCTCCAACCAGATTGGCAAGTTTCGTGCTTTACTCCCATTCTATTATCTACTGGAGCAAAATCCCGAAAGATGAAGTCTGACATAGCTTCTCATGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAGGGTGAGGGTCATGGGAGTGCAGTTGACTGGTGGACTTTTGGTATACTTTTGTTTGAGCTTTTATATGGTAAGACTCCATTCAAAGGCCAATCAAATGAGGACACATTAGCCAATGTTGTGTCACAATGCCTAAAGTTCCCTGGTGCTCCAATAGTCAGTTTTCATGCCAGAGACTTGATCAGAGGGTTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCACCCGTTTTTTGAAGGCCTCAATTGGGCTCTAATACGGTGTGCGGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAACAAGTGCTCCATATATGGCTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAAAAGATTGTGAAGAGTTTGAGCTGTTTTAG	2487	0.4246	MDTSGSTCEIVESREEIISEIKTVDKPESSCAHKSGKRYSIENDINQLFQAIDIKSSSRGHSSSRLQKNALKRPIKVSSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRASEAGTIKRLYTAVVDEGKGNLVEISLVPEISTAPSNKLPGVSISSSIDHCTSPLVDAKKPKEMMIGFSSQDQIVPLPLEVEGYKPVVDIGTPILANLSPVACASDVVPEVLRDPVSLSKASLSSSMPGKGQESNLHPASCPLSSSAGNGGDKSISSSTCLSKPIFNNLNFLKKKVKQDSSSASSCSTPFTSNLDKEVENSDLKHGVKENEKLSPSCSNHSIEVSSNSVGTDSSKPGFSLNCNKRTKFLVTKVDEKSRSKEKGDFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHMRWEVIRVVQQQHGNLNLKHFKLLKRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLSSRKKMFRAQTEREILQMLDHPFLPTLYSYIATDKLSCLVMEYCPGGDLHVLRQRQSYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTCSEASCIHPFCLQPDWQVSCFTPILLSTGAKSRKMKSDIASHVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELLYGKTPFKGQSNEDTLANVVSQCLKFPGAPIVSFHARDLIRGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGTSAPYMAANKENANDLEDIKDCEEFELF*	829

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g2701	828	Gene3D	Phosphorylase Kinase; domain 1	444	525	-	-
	Vra5g2701	828	MobiDBLite	consensus disorder prediction	243	270	-	-
	Vra5g2701	828	SUPERFAMILY	Protein kinase-like (PK-like)	420	796	IPR011009	-
	Vra5g2701	828	PANTHER	SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1	1	827	-	-
	Vra5g2701	828	MobiDBLite	consensus disorder prediction	334	358	-	-
	Vra5g2701	828	PANTHER	FLIPPASE KINASE 1-RELATED	1	827	-	-
	Vra5g2701	828	Pfam	Protein kinase domain	447	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g2701	828	Pfam	Protein kinase domain	674	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g2701	828	Gene3D	Transferase(Phosphotransferase) domain 1	671	795	-	-
	Vra5g2701	828	ProSiteProfiles	Protein kinase domain profile.	446	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g2701	828	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	567	579	IPR008271	GO:0004672\|GO:0006468
	Vra5g2701	828	SMART	serkin_6	446	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g2701	828	CDD	STKc_phototropin_like	444	800	-	-
	Vra5g2701	828	Gene3D	Transferase(Phosphotransferase) domain 1	526	595	-	-
	Vra5g2701	828	MobiDBLite	consensus disorder prediction	381	422	-	-
	Vra5g2701	828	MobiDBLite	consensus disorder prediction	388	416	-	-
	Vra5g2701	828	MobiDBLite	consensus disorder prediction	329	358	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g2701	Vra-Chr5	33673262	33680172	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g2701	371	828	AGC Kinase Gene Family	AT3G52890	65.962	0.0	630

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vra5g2701		Pkinase	1.8e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g2701	-		-	gmx:100789339	1345.49