Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2692 ATGAATGTGACAAATAAGCCAAATCCAGATGGTTCCACCAATGGGTTTCAGTCTCTGCTTCAACAGCAACACAGTAATGCTTGGGAGGGATCATCTACACATCCACCCACTGAGCCTTATCCTGCACCAACGGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTTCAAGCTTTTCATCAATCACTTGGTACCAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTATTGATCGTAAGTGGAAGGAAGTGATTCTGGCCTTCAATTTCAAAGATACCATAACAAGTGCATCATTTGTAGTGCGAAAATCTTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGTTACTCCAGTTCAGGGATATGATGCTGTGCTTTCTGGAACAATTGATGTGAAATTTGATGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCTGATAACATGTCCAAGAGTTCTCATACCGAAGGCAATACCAGTTCACAGAATCATGGTGAAGGCACATCTGGGTCGCACAGTCGAAAGAGAGCAAAATATACACCACGTGATCCTTTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAATACAAATCCAACAATTCAACTCCAAATGCTCAATAG 939 0.426 MNVTNKPNPDGSTNGFQSLLQQQHSNAWEGSSTHPPTEPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIIDRKWKEVILAFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPVTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSKSSHTEGNTSSQNHGEGTSGSHSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNAQ* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2692 312 SMART bright_3 52 143 IPR001606 GO:0003677
Vra5g2692 312 SMART hmgende2 235 304 IPR009071 -
Vra5g2692 312 MobiDBLite consensus disorder prediction 198 217 - -
Vra5g2692 312 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 236 303 IPR009071 -
Vra5g2692 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 163 311 - -
Vra5g2692 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 23 152 - -
Vra5g2692 312 SMART ARID_2 48 138 - -
Vra5g2692 312 MobiDBLite consensus disorder prediction 198 239 - -
Vra5g2692 312 Gene3D - 43 148 IPR036431 GO:0003677
Vra5g2692 312 MobiDBLite consensus disorder prediction 218 234 - -
Vra5g2692 312 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Vra5g2692 312 Gene3D High mobility group box domain 219 311 IPR036910 -
Vra5g2692 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 23 152 - -
Vra5g2692 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 163 311 - -
Vra5g2692 312 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vra5g2692 312 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Vra5g2692 312 SUPERFAMILY HMG-box 235 306 IPR036910 -
Vra5g2692 312 Pfam HMG (high mobility group) box 236 303 IPR009071 -
Vra5g2692 312 MobiDBLite consensus disorder prediction 24 44 - -
Vra5g2692 312 CDD HMGB-UBF_HMG-box 236 299 - -
Vra5g2692 312 SUPERFAMILY ARID-like 49 153 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2692 Vra-Chr5 33605754 33609753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2692 45 308 ARID Transcription Factor Family AT3G13350 51.220 6.02e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra5g2692 ARID 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2692 - - gmx:100793029 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2692 5 33605754 33609753 Vra5g2692 5 33605754 33609753 ECH