Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2684 ATGTCGGAGGGCGATCAGCGCCGTCTTCTGGGGCTGTCGGAGGATGACGTGGAAGCTCGAGGGTCGGAGTTGGCCGTCGTCAATGGCGGCGGCGGCATCAACAGCAACAACAAAGGTTTGAGGGATTTGTTAAGGTTGTCGGGTCACCGACAGAGTTTCAAGCGCATTGAGAAGGAAGAAGATAGAGATAGAGACAGGGATAGAGATAGAAGGGAACAAAATCGGCATCATCACGATGTGGATCTTGATTCTTCTGTTGAGGTGCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTACTCATCGGTTGCCTCATTGGACTCACAACTGGCCTCTTTGTTGCCTTTTTCAATAAAGGGGTGCATATAATACATGAGTGGGTATGGGCTGGTACTCCAATTGAGGGTGCTGCCTGGCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTAATACCTGTCACTGGAGGAGTCATTGTCGGAATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAATCCACTGCCTCTCAAACACAAGGTTTTGATTTTCTTGCAGGAATCTTTCCGACAATAAAGGCTATTCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGGCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTCTCACTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCGGCGGCTGGAATTTCGTCAGGCTTCAATGCACCAGTTGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTCCGAGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCATCAACTGTATCAAATGTTTTACAGGGGATCAAATCAGCTTTTACAATTCCCGAGTATGATTTGAAATCTGCTGCTGAGCTACCTCTATACCTGATATTGGGAATGCTTTGTGGTGTTATAAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTATTTAAGTTTATTCAGGATAAGTTTGGCATTCCTACTGTGGTTTGCCCTGCTTTAGGTGGTTTCGGAGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGAAGAAATTTTACGTACCGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTAACTCAATTGGTAGTTTCTAAGGTCATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTTGGTGGTCTTTATGCTCCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTCTTTGGAGGCTTTTCCGCTGAAGTTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCGGCTACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTCGAGCTCACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCTTCAGTGACAAACCAGGCGAAGGAGAGTGATACACCCGAGGCAAGTAGCTCATTAAGAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGGTAACTGGAGACAAGTCAATGATGGGAATGATTTAGAGCTCCATATTGTTGGGGATGGCGCTGATCTTGAAACAACTGACAAGGAACTTCTTCTGGACAATCTTCAGGTTTCTCAAGCAATGTCAAAACAATATTGTAAAGTTTTGTCATCTGCAATCTTGAAAGATGCAATAAAATTGATGCATGACAGCCAGCAGAATTGTGTGCTGGTAGTTGATAAAGAAGATTTTCTGGAAGGAATATTGACATATGGTGACATAAGGAGGTGTCTGTCTCAGGAGTCTCATGACACTTTGAAGAGTGGTATAGTGGTTGTGGATTCAAACACATGCCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGCTATCGTGGACGAGCTCGAGGAATTTTGACCTGCTATCCAAATACTAGCTTGGCTATGGCCAAAGAGTTGATGGAAGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGTGGTGGAGATCAGAGTAGAGAAAGAAAAAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACAGGCAAACAGCCTATCAAAATCTGACAGATAACAGTTTGGCAGTGACAACAACAAATGGTCATTAA 2280 0.443 MSEGDQRRLLGLSEDDVEARGSELAVVNGGGGINSNNKGLRDLLRLSGHRQSFKRIEKEEDRDRDRDRDRREQNRHHHDVDLDSSVEVLGDSAPPEWALLLIGCLIGLTTGLFVAFFNKGVHIIHEWVWAGTPIEGAAWLRIQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTASQTQGFDFLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIKSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKLFKFIQDKFGIPTVVCPALGGFGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVVSKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQAKESDTPEASSSLRGYSPVSHAGDDNEGNWRQVNDGNDLELHIVGDGADLETTDKELLLDNLQVSQAMSKQYCKVLSSAILKDAIKLMHDSQQNCVLVVDKEDFLEGILTYGDIRRCLSQESHDTLKSGIVVVDSNTCLVSSVCTRGMSYRGRARGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDQSRERKRRIVGLLHYDALWQCLRKEINHRQTAYQNLTDNSLAVTTTNGH* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2684 759 MobiDBLite consensus disorder prediction 55 78 - -
Vra5g2684 759 MobiDBLite consensus disorder prediction 523 552 - -
Vra5g2684 759 Gene3D - 570 732 IPR046342 -
Vra5g2684 759 MobiDBLite consensus disorder prediction 523 538 - -
Vra5g2684 759 Gene3D Clc chloride channel 84 529 - -
Vra5g2684 759 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 PRINTS Chloride channel signature 249 268 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 PRINTS Chloride channel signature 426 446 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 PRINTS Chloride channel signature 467 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 PRINTS Chloride channel signature 485 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 ProSiteProfiles CBS domain profile. 589 646 IPR000644 -
Vra5g2684 759 CDD Voltage_gated_ClC 110 512 - -
Vra5g2684 759 Pfam CBS domain 585 639 IPR000644 -
Vra5g2684 759 Pfam CBS domain 677 724 IPR000644 -
Vra5g2684 759 SUPERFAMILY CBS-domain pair 583 737 IPR046342 -
Vra5g2684 759 SUPERFAMILY Clc chloride channel 95 519 IPR014743 -
Vra5g2684 759 CDD CBS_pair_voltage-gated_CLC_euk_bac 589 729 - -
Vra5g2684 759 Pfam Voltage gated chloride channel 190 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra5g2684 759 ProSiteProfiles CBS domain profile. 669 741 IPR000644 -
Vra5g2684 759 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 34 756 - -
Vra5g2684 759 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 34 756 - -
Vra5g2684 759 SMART cbs_1 592 640 IPR000644 -
Vra5g2684 759 SMART cbs_1 677 733 IPR000644 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2684 - - gmx:100787625 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2684 5 33544844 33556427 Vra5g2684 5 33544844 33556427 ECH