Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2680 ATGGCTGGGATTGATGATAATGTTGCCCTTTCTGGTGATTGGGGTCTTGCTAGCCCAAGTCCAAGAACATTTTTCTCTAGAATGTTGGAGGAAGAAAATGTAACAAGATCAGTCTCAGAGCATTCTGGAAGTGGTAGAACTGGGGAATTCTTTTCAGGACCACACGAGCCTAGTGAGACAGGGAAGCGAAACATGCAGGATGCAGCACAAGATGGAGATTCTGTAGCCCAATTGAGTTTTCAGACCGAGCAAAAGCCTAACTCCAGAGGTGGTCTTGTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGCCCCTAGGTTGAACACTGAAGGCATTAGATCTACTGATCTTTCACTCAATTCAGACATTCAGTCTCCTTACTTGACCATCCCACCAGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCTCCAACAACTGGAAAGTTTCTGTTTATGTCAAATGGCAACATGCGGCACCCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAATGGCTTTGATGATATCTATACATCATCCTTTGCTTTCAAGCCTGCAACAGACTCAAGCTCCTCTTTCTATCATGGTGCTGGAAGAAAAATAAATCCAACTACATTTCCTCAACAATCCCATCCTGGTATTGAGGTTTCGGCTCAGTCAGAAAATTCTTTTCATTCCCAAAGTGTTGATGCTGCCAAAGTTCAAACTGAGAACAAAAATGGTCTTCATCTTCAGGCAGACTTTGCCGAATCGCCTCCTGAAAAGGATATTAAAATGTTTCCAGCTGATCAAAGGGCTTTTGATGCTGTTGGTGGTGGCATTGAACATTCTACACCAGTTGAAGAGCATGGAGATGAAGAAGGAGATCAAAGAGCTAATGGAGATTCAGTGACTGGTGGTGTTGGGGGTGCACCATCTGATGATGGATATAACTGGAGAAAATATGGCCAAAAACAAGTGAAAGGCAGCGAGTACCCTCGAAGTTACTACAAGTGCACCCATCCAAATTGTCAGGTCAAGAAGAAAGTAGAACGATCCCACGAAGGCCACATAACTGAGATCATCTACAAGGGAACGCACAACCATCCAAAACCTCCTCCTAATCGCCGATCAGGTCTAGGTTCAGTTAACCCTCACAGTGACATGCAAGTTGACAACCCTGATCATGTTGAATTACACAATGGTGGTGATGGTGACATCGGCTGGAGTAATGTACAAAAGGGAAATATAGTTGGAGCTGCTAACTGGAAGCACGAAAACCTCGAAGCAACATCATCAGCATCTATTGGCCCTGAGTACTGCAACCAGTCCAATTTGCAGACGCAAAATGGTGGTACTCTTATTGATTCAGGAGAGGCAGTTGATGCCTCGTCTACTTTCTCTAACGAAGAAGATGAAGATGATCAAGGCACTCATGGTAGTGTATCATTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCTAAGAGAAGGAAACTGGAATCATATGCAGACCTGAGTGGAGCTACTAGAGCCATTCGTGAGCCTAGAGTTGTTGTACAAACTACCAGTGAGGTAGATATCCTCGATGATGGTTATCGGTGGCGCAAGTATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACAAATGCAGGCTGCACAGTAAGGAAACATGTGGAGAGAGCATCACACGACCTTAAATCTGTGATCACCACTTATGAGGGAAAGCACAACCATGATGTTCCTGCTGCTCGTGCCAGCAGCCATGTCAATGCTAACGCTTCAAATGCCAACCAAGCTTCTGGTGTTCTTCATAGCCATGTTCATAGACCAGAACCATCTCAAGTACACAATGGCATGGGAAGGCTTGAGAGGCCGTCCCTCGGCTCATTCAACCTACCCGGAAGACAGCCGCTAGCACATTCCCACGGTTTCTCCTTTGGCATGAACCAACAGATGCTATCGAATCTGGCAATGTCAGGGTTAGGCCACATGCAAGCCAAGCTCCCTGTCATGCCTGTTCATCCATTCTTGGCACAGCAACAACAGCAAAGTCCTTCAAACGATTTTGGTTTCATGATGCCAAAGGGAGAGCCAAATGTAGAGGCTATTCCTGAACGTGGTGGTGGCCTTAACCTGCAAAATGGCTCATCAGTGTACCAAGAAATCATGAGTCGCATGCCCCTTGGACCTCACATGTAA 2241 0.4529 MAGIDDNVALSGDWGLASPSPRTFFSRMLEEENVTRSVSEHSGSGRTGEFFSGPHEPSETGKRNMQDAAQDGDSVAQLSFQTEQKPNSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFLFMSNGNMRHPELSSDAPEKCKDNGFDDIYTSSFAFKPATDSSSSFYHGAGRKINPTTFPQQSHPGIEVSAQSENSFHSQSVDAAKVQTENKNGLHLQADFAESPPEKDIKMFPADQRAFDAVGGGIEHSTPVEEHGDEEGDQRANGDSVTGGVGGAPSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPPPNRRSGLGSVNPHSDMQVDNPDHVELHNGGDGDIGWSNVQKGNIVGAANWKHENLEATSSASIGPEYCNQSNLQTQNGGTLIDSGEAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYADLSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNANQASGVLHSHVHRPEPSQVHNGMGRLERPSLGSFNLPGRQPLAHSHGFSFGMNQQMLSNLAMSGLGHMQAKLPVMPVHPFLAQQQQQSPSNDFGFMMPKGEPNVEAIPERGGGLNLQNGSSVYQEIMSRMPLGPHM* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2680 746 SMART WRKY_cls 535 594 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 SMART WRKY_cls 319 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 Gene3D WRKY domain 522 588 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 MobiDBLite consensus disorder prediction 1 74 - -
Vra5g2680 746 ProSiteProfiles WRKY domain profile. 530 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 SUPERFAMILY WRKY DNA-binding domain 318 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 ProSiteProfiles WRKY domain profile. 320 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 MobiDBLite consensus disorder prediction 291 305 - -
Vra5g2680 746 MobiDBLite consensus disorder prediction 468 506 - -
Vra5g2680 746 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 Pfam WRKY DNA -binding domain 536 592 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 SUPERFAMILY WRKY DNA-binding domain 527 595 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 671 IPR044810 GO:0003700
Vra5g2680 746 MobiDBLite consensus disorder prediction 285 326 - -
Vra5g2680 746 Gene3D WRKY domain 310 379 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g2680 746 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 103 671 - -
Vra5g2680 746 MobiDBLite consensus disorder prediction 219 244 - -
Vra5g2680 746 MobiDBLite consensus disorder prediction 369 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2680 Vra-Chr5 33473411 33478083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2680 1 741 WRKY Transcription Factor Family AT5G56270 49.032 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g2680 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2680 K18835 - gmx:100127395 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2680 5 33473411 33478083 Vra5g2680 5 33473411 33478083 ECH