Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2677 ATGGCTTCGTCTTCGAGTAGCGGATTGACGTTCAAGCTGCATCCTCTAGTAATAGTAAACATCTCCGACCATTACACGAGGGTCAAGTCTCAGATGAACCCAACCCTTGCACCATCGCACGGTAACAACGCCGCCGCACCCAACGGTGCCGACGGCGTCGTTTCGACTCTCCCTCCCCGGGTCTATGGATGTGTCATAGGAGTGCAGAAGGGCCGCACCGTCGAGATCTTCAACAGCTTCGAACTCCTCTACGATCCTTCCACTCATTCCCTCGATCGCACCTTCCTCGAGAAGAAACAAGAACTCTATAAGAAGGTGTTCCCACACTTCTACATACTGGGATGGTATTCGACTGGAAGTGATGCGGAGGAATCAGACATGCATATTCACAAAGCTCTGATGGATATCAATGAAAGCCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCATTCTCAGAAGGATCTCCCAGTCAGTATTTATGAAAGTGAACTGCATGTCATAGATGGGATTCCGCAACTTATCTTTGTTCTCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGAATATCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCGGCTACACAGCTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTACCTTGTGAAAATTCACTATTAAGACAAGTGTCAAGTCTGCTGAGAAGATTGCCTGCTATTGAATCCGGGAAATTTCAAGATGATTTCTTAATGGAGTACAATGATACCTTATTGATTAGTTACCTGGCAATGCTTACCAACTGCTCAAGTGGAATGAATGAGCTGGTGGACAAATTTAATACCGCTTATGATAGGCATACCAGAAGAGGTGGACGAACTGCTTTTATGTGA 963 0.4476 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPSHGNNAAAPNGADGVVSTLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIYESELHVIDGIPQLIFVLSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSGMNELVDKFNTAYDRHTRRGGRTAFM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2677 320 SMART pad1_6 10 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra5g2677 320 Gene3D Cytidine Deaminase, domain 2 1 201 - -
Vra5g2677 320 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 320 - -
Vra5g2677 320 Pfam Maintenance of mitochondrial structure and function 187 301 IPR024969 -
Vra5g2677 320 CDD MPN_CSN6 9 316 IPR033859 GO:0000338|GO:0008180
Vra5g2677 320 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 139 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra5g2677 320 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 320 - -
Vra5g2677 320 ProSiteProfiles MPN domain profile. 11 167 IPR037518 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2677 2 271 Eukaryotic Initiation Factors Gene Family AT2G39990 22.182 4.45e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2677 K12179 - gmx:100797079 595.504