Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2671 ATGGCGATGCGCGACCTCGTTTCGGGTGCTGCCGCTTGCGGTGACTCTTCTTCTTCCTCCGCTAATCCTCTCGCTTCTCTAGCCAACGCTCTTGTTGGCTCTTCCTCCAAAACTCAGGAGAGGCTGAAGGAGATTCCGACGTCCACTCCTACTGACCCTACCTCTCAATTTTACTCCACTGCTCTTCCCGTCAATCATCTTCCCGGCTCCGAATTCGATAAGCCTCTATTGGATGCAAACTCTCAGGCTTCGGAGTTTTTGCATAGGTTCCGTGGCGCGAATGGGATGGAAGAGACGTGGGATGAGATACAGCGCGAGGCTGGGGTTGCCGGACCGCGGCAACTGGTGCCGGCGATTCAACAGCAGCCGTTGGATGGGACACCACAAAGAGTTCTATCGAGTTTTTTGCACTCATTTCTTGATAGCAGCCGTGGTGGAGTGCCTTTTCATCCTACCCCTCTTCCGATGCTGGGTTTATCTGAAGGTGATAAACAATGCATACGAGACCGTAGCAGCATAATGGCCAGACATCTTTTTGCAGATAAAAGTGAAGAATTTATTGATGCACAAGTAAATGCACTTCTATGCTCTCTAGATATTGATAGCAACGTCCGTGGTAAGGGACCTATGCCTGAAAGATTTCGGGAGCTTGAGGGTTACTGGAATGAATCTCAAGGCAATATGAGACCCGGTCCTCCTGCTGCAGACGGGTGGATTACTGAATTTAGTCAACATACGGGAAAATATGATAATCCTGATTCATGGGCTAACTCCTTTGAGCAACAACATGGTGCAAATGGTTGGGCGTCTGAATTTGAACACTCCCAATTGTCATCAGTAGGTCAAATGCAAGGTATGAACATGTCAAACTTTGCTGCAATGGAACAGACTCGTATGCTTGCAAATACATTGGCCCAAAATGGTGATCCTAAATTTCAGAACTCAAAATTCCTTCAATTTGTGTCGAAGATGAGCCGTGGTGAGTTAATTATTGATGACAATCAGGTTAAAGAGAATTCATTACCTGCATCTGGAGATTGGGCAACAGAGTATGATCAACAATATAATCCTGGTCATGCATGGGCTGGAGAATATTTAAATGATAAGGTTTATCATGGACCTGATCAGTGGGTGAATGAATATGCAACTGAAGGACGGCAGCATGATGCAAATGATGATCAGTGGGTTAATGAATTTTCAAAGTTGAATGTTAATGATTGGGCAGATGAATTTGGTCAGCAGTTAGGTGAAGCAGCCTTAGGAGACAGCACTTCTGATAGTTGGGCACAAGCATATAATGAGTTCCTAAATGAGCAAGTTGCTTCCAAGCAGCAGTCAGACAGTTCGAGGGGTGTGTATGTCTTTTCAGATTTAAACCCTTATGTTGGCCATCCAAATCCCCTAAAAGAAGGCCAAGATCTATTCAGAAAAGGACTTTTAAGTGAAGCAGTTCTAGCATTGGAAGCGGAAGTCATAAAAAATCCTGAAAATGCTGAAGGATGGAGACTGCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCAGCAATGATGCGTGCACAGGAGGCTGACCCGACAAACTTGGAGGTGCTTCTTGCTCTTGGTGTTAGTCATACAAATGAACTAGAGCAAACAGCTGCACTGAAGTATCTATATGGATGGTTGCGCCATCACCCAAAATATGGAACACTTGCCCCGCCTGAGATGTCTGATTCTTTGTACTATGCTGATGTTGCTAGGCTATTCAATGAAGCCGCTGAACTGTCTCCGGATGATGCAGATGTCCACATAGTTCTTGGGGTCATGTATAACTTATCCAGAGAATATGACAAAGCTATTGCATCTTTTGAAAGAGCACTGAAACTTAAGCCACAGGATTACTCATTATGGAACAAACTGGGTGCTACACAAGCAAACAGTATTCAAAGTGCTGATGCAATAATGGCTTACCAACAGGCACTGGATTTAAAGCCTAACTATGTTCGTGCTTGGGCAAATATGGGTATCAGTTATGCAAATCAGGGTATGTATGACGAGTCCATTCGATATTATGTTCGAGCACTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCGTTAAGCTGTGCTTCTAGGAATGACATGTTGGAAGCTTGTGATAGTCGTAATTTGGACCTTCTCCAGAAGGAGTTTCCTCTACAGTAA 2211 0.4437 MAMRDLVSGAAACGDSSSSSANPLASLANALVGSSSKTQERLKEIPTSTPTDPTSQFYSTALPVNHLPGSEFDKPLLDANSQASEFLHRFRGANGMEETWDEIQREAGVAGPRQLVPAIQQQPLDGTPQRVLSSFLHSFLDSSRGGVPFHPTPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFIDAQVNALLCSLDIDSNVRGKGPMPERFRELEGYWNESQGNMRPGPPAADGWITEFSQHTGKYDNPDSWANSFEQQHGANGWASEFEHSQLSSVGQMQGMNMSNFAAMEQTRMLANTLAQNGDPKFQNSKFLQFVSKMSRGELIIDDNQVKENSLPASGDWATEYDQQYNPGHAWAGEYLNDKVYHGPDQWVNEYATEGRQHDANDDQWVNEFSKLNVNDWADEFGQQLGEAALGDSTSDSWAQAYNEFLNEQVASKQQSDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVIKNPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLYGWLRHHPKYGTLAPPEMSDSLYYADVARLFNEAAELSPDDADVHIVLGVMYNLSREYDKAIASFERALKLKPQDYSLWNKLGATQANSIQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDESIRYYVRALAMNPKAENAWQYLRISLSCASRNDMLEACDSRNLDLLQKEFPLQ* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2671 736 SUPERFAMILY TPR-like 449 735 IPR011990 GO:0005515
Vra5g2671 736 Pfam Tetratricopeptide repeat 597 630 IPR001440 GO:0005515
Vra5g2671 736 Pfam Tetratricopeptide repeat 666 697 IPR001440 GO:0005515
Vra5g2671 736 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 735 IPR024111 -
Vra5g2671 736 ProSiteProfiles TPR repeat profile. 665 698 IPR019734 GO:0005515
Vra5g2671 736 ProSiteProfiles TPR repeat profile. 597 630 IPR019734 GO:0005515
Vra5g2671 736 ProSiteProfiles TPR repeat region circular profile. 665 697 - -
Vra5g2671 736 SMART tpr_5 665 698 IPR019734 GO:0005515
Vra5g2671 736 SMART tpr_5 631 664 IPR019734 GO:0005515
Vra5g2671 736 SMART tpr_5 498 531 IPR019734 GO:0005515
Vra5g2671 736 SMART tpr_5 597 630 IPR019734 GO:0005515
Vra5g2671 736 MobiDBLite consensus disorder prediction 33 56 - -
Vra5g2671 736 Gene3D Tetratricopeptide repeat domain 447 736 IPR011990 GO:0005515
Vra5g2671 736 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Vra5g2671 736 ProSiteProfiles TPR repeat profile. 631 664 IPR019734 GO:0005515
Vra5g2671 736 ProSiteProfiles TPR repeat region circular profile. 597 630 - -
Vra5g2671 736 PANTHER BNAC09G53570D PROTEIN 1 735 - -
Vra5g2671 736 Pfam Tetratricopeptide repeat 468 530 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2671 610 728 Glycosyltransferase AT3G04240 31.933 6.66e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2671 K13342 - gmx:100527272 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2671 5 33372520 33385880 Vra5g2671 5 33372520 33385880 ECH