Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2661 ATGGAAACCCTTATTGCAAAAGTAAGCATCACACTCCTATTCATGTCTTCAATCTTCTCAGTAGCTTCATCAAGAAGAGCACCAGCTTCATCCAGCAACATAGATTGGTGGTGCAACCTAACTCCACACCCTGTGCCATGCAAACACTACATCACCACCACTCAAACGAAGAGCCACCGTTTCACATTGGTCAAGCACAGAACTACCTTCCGAGGAATGCTCGTTGAACATGCCCTAAACCAGGCTCTCATCATGCAGAAAGAAGCACTTCACTCTGACCAAACCAGCATGCCAACAAAGAACCACAGAACCGTGCACGGTGATTGCGTGAAGCTCTATGGAAAAACCATCTTCCACCTCAATCGAACCCTCGAGTGCTTCCATGGGAACCAGAACTGCTCCTCCGTTGATGCACAGACATGGCTCAGCACTGCCCTGACTAACATTCAAACGTGTCAAGATGGAAAAATCGAACTTGGTGTTGAAGATTCCAACAACAACAACAACACCAATGTGACTGAGATGATAAGGAACAGCTTGGCCATCAACATGGACTTCATGAAACTCGATAATCACACGGAAACAGCTCACGAAGAAGCGTTTCCAAGTTGGTTTTCAAAGCCTGAGAGGAAACTGTTGCAGTCCACTACGATAAAGGCTCAAGCAGTGGTGGCAAAAGATGGTTCTGGGGATTTCAGAACCGTGCAAGAAGCTCTCAATTTTGCAGCAAACAGGAAGGTGAAAACGAGGTTTGTGATACATGTGAAGAAAGGGGTTTACAAGGAGAATATCGAGGTTGCTGTGCACAATGATAACATCATGCTGGTCGGTGATGGAATCAGAAACACTGTAATCACGAGTAGCAGAAGTGTTCAACAGGGTTACACCACTTATAGCTCTGCAACTGCTGGCATAGATGGTCTCCACTTCATTGCAAGGGACATCACCTTCCAAAACACCGCCGGAGCTCAAAAGGGTCAAGCGGTGGCGCTCCGGTCAGCCTCCGATCTCTCCGTCTTCTACCGGTGCGCCATCATGGGCTTCCAAGACACGCTCATGGCCCATGCGCAGCGCCAATTTTACAGGCAATGCTACATCTACGGCACCGTTGACTTCATATTTGGCAATGCAGCTGTGGTGTTGCAAAACTGTTACATTTACGCCAGAAAACCCTTAGAGGGCCAAGCCAACATGATCACGGCCCAAGGCCGAGGTGACCCGTTTCAGAACACTGGGATTTCAATCCACAATTCTCAAATTCGGGCCGCCCCAGATCTCAGGCCCGTTGTTGACAAATACAACACCTTCTTGGGTAGGCCTTGGCAACAATACTCGAGAGTTGTGGTCATGAAAACTTTCATGGACACCTTGGTGAGCCCATTGGGCTGGTCCCCATGGGGTGATTCGAATTTTGCCCAAGACACACTTTACTATGGTGAATATCAAAACTACGGGCCTGGCGCATCTACAACCAATAGAGTGAAATGGCCCGGGTTTCATGTGATCACAAGCCCAGCTGAAGCGTCTCAATTTACCGTCACACGCCTCCTTGCAGGCCCAACTTGGTTGGGCTCCACAACTGTGCCATTTACCTCTGGGCTTTGA 1605 0.486 METLIAKVSITLLFMSSIFSVASSRRAPASSSNIDWWCNLTPHPVPCKHYITTTQTKSHRFTLVKHRTTFRGMLVEHALNQALIMQKEALHSDQTSMPTKNHRTVHGDCVKLYGKTIFHLNRTLECFHGNQNCSSVDAQTWLSTALTNIQTCQDGKIELGVEDSNNNNNTNVTEMIRNSLAINMDFMKLDNHTETAHEEAFPSWFSKPERKLLQSTTIKAQAVVAKDGSGDFRTVQEALNFAANRKVKTRFVIHVKKGVYKENIEVAVHNDNIMLVGDGIRNTVITSSRSVQQGYTTYSSATAGIDGLHFIARDITFQNTAGAQKGQAVALRSASDLSVFYRCAIMGFQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVLQNCYIYARKPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLRPVVDKYNTFLGRPWQQYSRVVVMKTFMDTLVSPLGWSPWGDSNFAQDTLYYGEYQNYGPGASTTNRVKWPGFHVITSPAEASQFTVTRLLAGPTWLGSTTVPFTSGL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2661 534 CDD PMEI-like_3 36 188 - -
Vra5g2661 534 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Vra5g2661 534 SMART PMEI_2 29 182 IPR006501 GO:0004857
Vra5g2661 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 183 IPR035513 -
Vra5g2661 534 Gene3D - 215 534 IPR012334 -
Vra5g2661 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 186 IPR035513 -
Vra5g2661 534 PANTHER PECTINESTERASE 6 533 - -
Vra5g2661 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Vra5g2661 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 183 IPR006501 GO:0004857
Vra5g2661 534 Pfam Plant invertase/pectin methylesterase inhibitor 33 182 IPR006501 GO:0004857
Vra5g2661 534 PANTHER PECTINESTERASE 6 533 - -
Vra5g2661 534 SUPERFAMILY Pectin lyase-like 216 533 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2661 Vra-Chr5 33288950 33290907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2661 27 534 Carbohydrate Esterase AT5G51500 55.146 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2661 K01051 - gmx:100800413 912.524