Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2660 ATGGCGAAAAGCCTTACCTTAATCACTGTCTTCATATCCTTGTTTTCTCTGTCTTCCACGGCCCCTTCAAGCAATATTTTCCCTAACGCCATTGATTTTTGGTGCAACAAAACTCCACATCCTCAAACATGCAAGCATTATTTTTCCTTGATAAAGCACGAGCCTCATGAAGATGGTATCCCGAAAACTGCATTTCAGTTCAAGAACCTCATCCTCAGAATTGCAATGCAGCAATCGGTGGAAGCCCAGATTCAGATCATGTGGTTGGGAACCAAATGCAGAAGCAAGCAAGAAAAAGCAGCATGGTCAAACTGCATAACCCTCTACCAAGACACCATCAACCTTCTCAACCAAGCACTTAACCCTACCAAAAAAAGCACAACCTATGATCTCCAAACATGGCTCAGCACAGCCCTAACCAACATTGACACATGCCAAACAGGTTTCCACGAGCTTGGAGTTATCGACAACGTTCTACCTCTCATTCCCAACAAGAACATCTCAGAGATCATAAGTGACTTTTTGGCTCTTAACAACGCTTCTTCCTTCATTCCTCCAAAGACTCACAAAAATGGCTTCCCTAGATGGTTATCTCCCAAGGATAGGAAGCTTCTGGAGTCGTCGTCGCCACCATCGTTGACACCAGATGTTGTGGTGGCTAAAGATGGTTCTGGGAACTTCGAGACCATAAAAGAAGCTTTGAAAGTAGTCCCCAGGATGAGCCAAAAGAGGTTTGTGATATATGTGAAACGTGGAGTTTACAATGAAAACATTGAGATTGAGAGTTCCATGAAGAACGTTATGCTGTATGGTGATGGTATGAGACTGACCATCATTTCTGGTAACCGAAGTGTCGGAGGAGGTTCGACAACTTTTGATTCGGCAACCGTTGCGGTTAGAGGAGATGGATTCATTGGGCGTGGCATCACATTTCGCAACACTGCAGGAGCGGAGAAGCACCAAGCAGTGGCGGTGCGTTGCGGCGGTGACCTCTCAGTGTTCTACCGGTGTGGCTTTGAGGGCTACCAAGACACTCTGTATGTGCACTCGCAGAGACAGTTCTACAGAGATTGCTACATCTATGGCACCGTGGATTTCATCTTTGGAAACGCTGCTGTGGTCTTCCAATCCTGCAACATTTATGCAAGAAGGCCAATGCAAAAACAGAAAAACGTGATAACAGCACAAGGTAGAACAGATCCAAATCAGAACACTGGGATTTGCATTGAGAATTCACGAGTTATGGCTGCTGAAGACCTAACTCCAGTGCTGAGTTCCTTCAAAACATTCTTGGGAAGGCCATGGAGAGAGTATTCAAGGACAGTGTTCTTGCAAAGTTACCTTGATGAATTGATTGATCCTGCAGGATGGTTGGAGTGGAAAGACGATTTTGCGCTTGAGACTTTGTACTATGGAGAGTTCAAGAACCTTGGTCCTAGGGCTTCCACGAGAGATAGAGTGAAATGGCGTGGCTTCCATTCCATAACAAGTTCAACCGAAGCTTCAAAATTCACTGTTGAAAATTTCATTGGTGGAAGATCATGGTTACCAAGCACAGGCATTCCATTTATCCCGTCATTAATATAA 1587 0.448 MAKSLTLITVFISLFSLSSTAPSSNIFPNAIDFWCNKTPHPQTCKHYFSLIKHEPHEDGIPKTAFQFKNLILRIAMQQSVEAQIQIMWLGTKCRSKQEKAAWSNCITLYQDTINLLNQALNPTKKSTTYDLQTWLSTALTNIDTCQTGFHELGVIDNVLPLIPNKNISEIISDFLALNNASSFIPPKTHKNGFPRWLSPKDRKLLESSSPPSLTPDVVVAKDGSGNFETIKEALKVVPRMSQKRFVIYVKRGVYNENIEIESSMKNVMLYGDGMRLTIISGNRSVGGGSTTFDSATVAVRGDGFIGRGITFRNTAGAEKHQAVAVRCGGDLSVFYRCGFEGYQDTLYVHSQRQFYRDCYIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKNVITAQGRTDPNQNTGICIENSRVMAAEDLTPVLSSFKTFLGRPWREYSRTVFLQSYLDELIDPAGWLEWKDDFALETLYYGEFKNLGPRASTRDRVKWRGFHSITSSTEASKFTVENFIGGRSWLPSTGIPFIPSLI* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2660 528 SUPERFAMILY Pectin lyase-like 214 524 IPR011050 -
Vra5g2660 528 Pfam Plant invertase/pectin methylesterase inhibitor 30 176 IPR006501 GO:0004857
Vra5g2660 528 Pfam Pectinesterase 216 512 IPR000070 GO:0030599|GO:0042545
Vra5g2660 528 Gene3D - 211 527 IPR012334 -
Vra5g2660 528 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Vra5g2660 528 SMART PMEI_2 26 177 IPR006501 GO:0004857
Vra5g2660 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Vra5g2660 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 179 IPR035513 -
Vra5g2660 528 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Vra5g2660 528 PANTHER PECTINESTERASE 6 524 - -
Vra5g2660 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Vra5g2660 528 PANTHER PECTINESTERASE 6 524 - -
Vra5g2660 528 CDD PMEI-like_3 34 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2660 Vra-Chr5 33286313 33287984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2660 1 527 Carbohydrate Esterase AT2G45220 55.871 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2660 K01051 - gmx:100776412 879.396