Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2659 ATGAATAGTTTTTCTCATGTTCCTCCCGGTTTTAGGTTCCACCCCACTGATGAGGAACTTGTTGACTACTATCTGAGGAAGAAAGTTACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACCTATATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAACAGAACGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACAGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCTATCTATTCAAAGCATGACTTGATAGGAATGAGGAAAACCTTAGTCTTTTACAAAGGTCGAGCACCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGAGCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAAGCTCTCAACCTAATAATTTGCCCTACCAGTTTCCATATCCATGCAAGAAAGAGCTAGATTTTCCATACCATTTGCCTCTCCAGCTTCCATTGGAGAATCAAAAACTGCTTCAATCTGCTGCCTCCAACTCAATCACACCATATGCTGTAGTAGAACAAAACCATGTCATGCATCAAGTTCAACACTCAATCATGCAGCAACAGAATTTTCAGGCAGTGTTTGGAAACAATGCCAATGAACAAGTGGCTGATTGGAGAGCTCTCGACAAGTATGTTGCTTCACAGCTCAGTCAGGAAGATGCACCCAAAGAGAACAGTTTCTCAAACACAGCCACCAACAACAACATGTTTCATGTGAAGAACAATAGCAGCATTGAACAGCTGGGAGACATGGACAAGGAGGAAATGATGCCTGAAAATGCTTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1029 0.414 MNSFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDEQVSFMQDMDSPKQSSQPNNLPYQFPYPCKKELDFPYHLPLQLPLENQKLLQSAASNSITPYAVVEQNHVMHQVQHSIMQQQNFQAVFGNNANEQVADWRALDKYVASQLSQEDAPKENSFSNTATNNNMFHVKNNSSIEQLGDMDKEEMMPENASTSNSSCPIDMWK* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2659 342 MobiDBLite consensus disorder prediction 285 307 - -
Vra5g2659 342 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Vra5g2659 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 333 - -
Vra5g2659 342 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vra5g2659 342 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vra5g2659 342 MobiDBLite consensus disorder prediction 323 342 - -
Vra5g2659 342 MobiDBLite consensus disorder prediction 326 342 - -
Vra5g2659 342 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vra5g2659 342 MobiDBLite consensus disorder prediction 286 307 - -
Vra5g2659 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2659 Vra-Chr5 33277566 33282196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2659 1 342 NAC Transcription Factor Family AT1G12260 58.592 6.83e-135 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g2659 NAM 4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2659 - - gmx:100809321 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2659 5 33277566 33282196 Vra5g2659 5 33277566 33282196 ECH