Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2655 ATGGAGCTGAAGCCAAATCTTACTCCAGTCCTTACTGATGCCGCACCCTTGACAAGGTCAAGGCTGGGTGTGTCTTCTGGTTTGTCACCTTACTCTTCTCCAAAAGGGGCAACCTTTCCCCATCACGGTCCCTTTCTGTCTATTCCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTTGATGCCATGAAATCTTCTTCTCCTACTCGCAATAAAGTATCCAAGGATCTCAATCATGGAATTGGATCACATGATGCTGCTTATAGTACCTGGCTGCTAAAGTTTCCATCAGCACTTGCATCCTTTGATCAAATTACTAACTGTGCAAAAGGGAAGAGAATAGCATTATTTCTTGATTATGATGGGACTCTTTCACCCATTGTGGACAATCCTGACTGTGCGTTTATGTCAGACAATATGCGTGCTGCTGTTAAAAAAGTCGCGGAATATTTTCCAACTGCAATAATCAGTGGAAGAAGGCGTGACAAGGTATATGAATTTGTTGGATTAAGTGACCTCTATTATGCTGGTAGTCATGGGATGGACATTATGGGTCCTCCCAGACAATCTACTTCTGATGATCACCCTGATTCTGATAAGCAGGGTTTCGGTGAACTTAATTTATTCCAACCTGCTGCTGAATTCCTGCCCATGATTAATGAGGTACTTGGGTTGCTCAAGGAGTGTACAAAAGACATTGAAGGAGCAACAGTTGAGAACAATAAATTTTGTGCATCTGTACATTACCGGAATGTAGATGAGGAGAATTGGCATGTTGTGGGACAACGTGTATATGATGTTTTGAAGGGGTATCCTCGTTTGCGTTTAACTCATGGGCGGATGGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTCGGCAATCGCGATGACGTGCTAACTATATATGTTGGAGATGATAGAACAGATGAAGATGCCTTTAAGGTTTTGAGAGAAGCTAATAAAGGTTGTGGCATCTTAGTGTCCTCTTCCCCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCCTCAGAGGTCATGGAATTTCTGACATCACTTGCTGTATGGAAATCAAGCATTCAAGCTCGCTGA 1149 0.4282 MELKPNLTPVLTDAAPLTRSRLGVSSGLSPYSSPKGATFPHHGPFLSIPRKKTGILDDFRSSGWLDAMKSSSPTRNKVSKDLNHGIGSHDAAYSTWLLKFPSALASFDQITNCAKGKRIALFLDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRRRDKVYEFVGLSDLYYAGSHGMDIMGPPRQSTSDDHPDSDKQGFGELNLFQPAAEFLPMINEVLGLLKECTKDIEGATVENNKFCASVHYRNVDEENWHVVGQRVYDVLKGYPRLRLTHGRMVLEVRPVIDWDKGKAVTFLLESLGLGNRDDVLTIYVGDDRTDEDAFKVLREANKGCGILVSSSPKESNAVYSLRDPSEVMEFLTSLAVWKSSIQAR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2655 382 Gene3D - 211 381 IPR023214 -
Vra5g2655 382 Gene3D - 119 207 IPR023214 -
Vra5g2655 382 TIGRFAM T6PP: trehalose-phosphatase 116 373 IPR003337 GO:0003824|GO:0005992
Vra5g2655 382 Pfam Trehalose-phosphatase 122 363 IPR003337 GO:0003824|GO:0005992
Vra5g2655 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 382 - -
Vra5g2655 382 SUPERFAMILY HAD-like 120 374 IPR036412 -
Vra5g2655 382 CDD HAD_TPP 120 367 - -
Vra5g2655 382 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 382 IPR044651 GO:0004805|GO:0005992
Vra5g2655 382 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 121 337 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2655 Vra-Chr5 33249217 33255108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2655 115 373 Trehalose Biosynthesis Gene Families AT1G70290 24.638 7.36e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2655 K01087 - gmx:100783008 674.085