Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2649 ATGGAAAAAATTCTGGAAGCAGATGCAAATACTGTATCTCAGCGTTCCTCATCTTCTTCAGTTGTTGCTTTGGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTGAATAAGTTTGTTCCCGAGGGAATGATTATCTTCAAGCTGATACATGTTCATGCTACTATAAAAGGAGTTCCAACGCCATCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAACAAATGAAATGCTGCTACCTTTCAAGAGATTGTGTGAGCAAAGAAAGGTGCATGTGGATGTTGTACTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGCTATCACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATATCTATGAAAATATCAGTAAGCACTCCAAGATTTTGCACTGTTTATGCTATTTCGAAGGGAAAATTGTCCATACGACAGTCAGACATGCCTATTGATGGAAACATTGTAGATGATGCTAGTGAAACCAGTTTGTCTTCCAGCAGCTCATCTAACTACACTTCCACTTCTCAGACAGAATCAGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCACTTCTAAGCACAAATCCGAGTTTAAGTGACACTAGCCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCTACCAGCTCTGCCAGAAACTCAGACATTGATCATGCCTTAAGTCGAGTCTCTAGTTGCAAAAGCTTTATTTCTGATACTGAATCTTGGATGTATGATCAAAATTCTATAAAGGATGTGCCACTAGCAGCTACACTTCCATCACCTAATAGGCAGGCAAAATTGAACCTTGAGCTGGAAAAGTTGAGAATTGAGCTAAGACATGTCCAAGGACTTCATGCAGTAGCTCAAAGTGAGAAAATTGAAGCATCCCGGAAGCTGAATGACCTTAGCAAGAGACGGTCAGAAGAAACCATAAAAATGAAGGAGATTATTGCTAAGGAGGAGAAGGCAAAAGAATTTGCAAAACTAGAAATAGAGAAATATCAGGATGCATCCAGAGAAGCTGTATATATGAAAGAATGTGCTGAAAGGGAGGCTGTGGAAAGGAAAGAAACAGAGTTGAAAGTCATCCGTGCCACAAAAGAGAAAGAAAAGTTGGAGGATGCTCTTAGTGGTAATATACTACAGTACCGGAAGTTTACATGGGCTGAAATAGTCTCAGCTACTTCATCTTTTTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAACAGTGTACAAGTGTATTTTGTATCACACAACTGTTGCCGTTAAAGTTCTCAACACCAATGGAAATCGTGAAAGCAAGCAATTCCAACAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTTCTTCTTCTGGGTGCATGTCCTGATCATGGATGTCTTGTATATGAATATATGGAGAACGGTAACCTGGAAGACAGACTGCTGAGAAAAAACAACACTTGCCCAATCACATGGTTTGAGAGATTTCGAATAGCTTGGGAAATTGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCTGCAAACATCTTGCTTGGTCGAAACCTTGTCAGCAAGATTGGTGACATTGGACTTAGTACAGTACTCCATTCCGATAATTTATCTACCATGTACAAGGACACAGCACCTGTTGGGACACTATGCTACATTGATCCTGAGTATCAAAGGACTGGCTTAATATCTCCAAAATCTGATGTCTATGCTTTTGGAATGGTGATCCTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAAGTTGAAACTGCAATTGAAGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGAGCTTGGCCATTTAAAGAGACACTAGATCTGGCTTTGTTGGGACTGAGCTGTGCAGAACTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCAAGTGCTTCCAATACTTGACAGATTAAAAGAAGTTGCTGATAGGGCCCAAAACTCTGCTTCAACTGTTACTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATTCTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATACGACCGCAAAGCAATTGATAAGTGGCTTGAAGAGAACGACAATTCACCAATGACAAACATAGCTTTACCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATTTTGGAGTGGAAGTCCGCAGAATCATGA 2382 0.4047 MEKILEADANTVSQRSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHATIKGVPTPSTAFKKEVEWQTNEMLLPFKRLCEQRKVHVDVVLIESDDVAIAIAEEVAKGAITKLVVGASSRGIFKSKQKGISMKISVSTPRFCTVYAISKGKLSIRQSDMPIDGNIVDDASETSLSSSSSSNYTSTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNPSLSDTSHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSIKDVPLAATLPSPNRQAKLNLELEKLRIELRHVQGLHAVAQSEKIEASRKLNDLSKRRSEETIKMKEIIAKEEKAKEFAKLEIEKYQDASREAVYMKECAEREAVERKETELKVIRATKEKEKLEDALSGNILQYRKFTWAEIVSATSSFSEDLRIGMGAYGTVYKCILYHTTVAVKVLNTNGNRESKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTCPITWFERFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLHSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIEGGNLTDILDPEAGAWPFKETLDLALLGLSCAELRRRDRPDLKDQVLPILDRLKEVADRAQNSASTVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIDKWLEENDNSPMTNIALPHKHLIPNYTLLSAILEWKSAES* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2649 793 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 17 789 - -
Vra5g2649 793 CDD RING-Ubox_WDSUB1_like 727 767 - -
Vra5g2649 793 ProSiteProfiles U-box domain profile. 722 793 IPR003613 GO:0004842|GO:0016567
Vra5g2649 793 PANTHER OS02G0152300 PROTEIN 17 789 - -
Vra5g2649 793 MobiDBLite consensus disorder prediction 174 195 - -
Vra5g2649 793 ProSitePatterns Protein kinases ATP-binding region signature. 445 466 IPR017441 GO:0005524
Vra5g2649 793 MobiDBLite consensus disorder prediction 232 260 - -
Vra5g2649 793 Coils Coil 394 416 - -
Vra5g2649 793 SMART serkin_6 439 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2649 793 Coils Coil 358 378 - -
Vra5g2649 793 SUPERFAMILY Protein kinase-like (PK-like) 422 693 IPR011009 -
Vra5g2649 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Vra5g2649 793 Pfam U-box domain 724 791 IPR003613 GO:0004842|GO:0016567
Vra5g2649 793 Gene3D Phosphorylase Kinase; domain 1 418 511 - -
Vra5g2649 793 SUPERFAMILY RING/U-box 721 790 - -
Vra5g2649 793 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 134 - -
Vra5g2649 793 SMART Ubox_2 726 788 IPR003613 GO:0004842|GO:0016567
Vra5g2649 793 ProSiteProfiles Protein kinase domain profile. 439 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2649 793 Pfam Protein kinase domain 442 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2649 793 CDD STK_N 23 159 - -
Vra5g2649 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 723 793 IPR013083 -
Vra5g2649 793 Gene3D HUPs 8 139 IPR014729 -
Vra5g2649 793 Gene3D Transferase(Phosphotransferase) domain 1 512 722 - -
Vra5g2649 793 MobiDBLite consensus disorder prediction 177 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2649 Vra-Chr5 33202610 33211270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2649 19 790 U-box Gene Family AT4G25160 52.253 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra5g2649 Pkinase 9.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2649 - - gmx:100801699 1328.15