Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2634 ATGGCTTTGAGGGTTATAGCAGTTTCGGCGGTTTCTACATTTCTAAGCTTTGTGGGTCTTCAGTTTTGCACAGACTTGTCTTTGGATAAACTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGACGATGCCAGCCAAGACATTGAGTTGCCCTCGGGTTTGTACACCACCATAGGGCTACTGCTGAATTGCATGATCAATTTATTTGTCCTTCTTAATCTTTGTATCAAGGCTGTGTTTTTCTCAGAGTTATATGCTTCTGAAACTCGTAAATTGATTGAGCGTCTAGTTAATTATGTCATTTACAAGGGAACATTTCTACCGCTGATTGTGCCACCAACAATTTACCAAGCAGGTCTTTGGTCAACTTGGTTGACTGTGCTTTGCTCTCTGAAGATGTTTCAAGCTTTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATCTTCGTGTATATTCGGCATTATTATTTGTTTTCATGGCTGATGTTCTCTGGATAAGGCTTTGTCTGACAATATATAGAACACATGGGTCCTCCATGTATCTGCTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTACATGGCTTTCAGTTGCTTGACATATGGCTGCATCATTCAGCTTGCAATAGGGATTTCCGATCACCTAAACTGCTTGACACATTAACTGCAGGTTCATTGTTGGAATGGAAGGGAATTCTTATTCGTAACTTGGGGTTTTTCCTAGACATGGCTACATTTTTCATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTACTTAGTGCAATAGTAAATCGCATAAAAGGCTTTATCAAGCTAAGGATAGCTCTAGGAACACTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTAAGAGCGTATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAGCTAAACTGCAATCATCTCTTCCATCTTGCATGTTTAAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGAGGGAGTGCCTGAAAATGAAGCAAGCTCTGACACAGGGACTATGTCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTAGACCGGCCAAACAATGCTAGACATGCCATGCCTACCGGATTGTATCCAAATCAGACACTAAACACTCCTGAAGGTGTTACTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCGTCTACTGCTATGAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCGAGTGCTTCAACCATTCCTCCCCCTAATGGAAGATCATTAGGACGAACTGGTAGTTTACATTTAAGGACTGCTTCACAGCCTCCAAATGATAATGTGGCTAATATACTTGCCATGGCTGAGACTGTTCGAGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGAACAAATTCTGTTATGGTTACTGTGAATAATCTTCTTCAAATGTGA 1758 0.4221 MALRVIAVSAVSTFLSFVGLQFCTDLSLDKLRSDGLIGWNLIHLDDASQDIELPSGLYTTIGLLLNCMINLFVLLNLCIKAVFFSELYASETRKLIERLVNYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFVFMADVLWIRLCLTIYRTHGSSMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNRDFRSPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFEGVPENEASSDTGTMSSDEQLARQISAGLDRPNNARHAMPTGLYPNQTLNTPEGVTWRGAGLDSGWLHSWPNQGVDGAGPSTAMRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPPPNGRSLGRTGSLHLRTASQPPNDNVANILAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2634 585 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 585 - -
Vra5g2634 585 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 585 - -
Vra5g2634 585 SUPERFAMILY RING/U-box 324 385 - -
Vra5g2634 585 ProSiteProfiles CUE domain profile. 545 585 IPR003892 GO:0043130
Vra5g2634 585 Gene3D - 544 584 - -
Vra5g2634 585 SMART ring_2 337 378 IPR001841 -
Vra5g2634 585 Pfam CUE domain 549 585 IPR003892 GO:0043130
Vra5g2634 585 MobiDBLite consensus disorder prediction 510 537 - -
Vra5g2634 585 CDD RING-H2_synoviolin 334 379 - -
Vra5g2634 585 Pfam Ring finger domain 335 379 IPR001841 -
Vra5g2634 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 385 IPR013083 -
Vra5g2634 585 CDD CUE_RIN3_plant 546 583 IPR035667 -
Vra5g2634 585 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2634 Vra-Chr5 33077415 33086061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2634 57 420 C3H Transcription Factor Family AT3G16090 27.411 4.51e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2634 K10636 - gmx:100820578 1088.17