Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2627 ATGGGTTCCAAGAGACCACATGTGATCATGACACCGTCGACAGCAGCTCCTGATAACTACCAACTAGACCCTTTCTCTGTTAATATTCCTGAACAACCAACATCAAATTCAAGTTTTGGCAACGTCTTCAACCCGTTTGAGAACTCTCTTGTTAGCTCGTCATCACGCAGAAGTTCCATGTCCAATCGCTCTTCTGGGAGCAAGAGCAACAACTCCATCCATGAAGTGAGTTTGAGCGGCTCGGCATCTAAATCCATTCCCGTTAGGTATGGCTCAAAGGGTGCAGATTCTGAAGGACTAAGCGTGTCTCAGAGGGAACTCAGAGATGAGGATGCGAGGTTAGTGTACATAAACGACCCTTTGAAAACGAATGAGACCTTTTTGTTTGCTGGAAACTCTATCCGCACGAGCAAATACTCCCTCCTCAGTTTCATTCCCAGGAACCTTTTTGAACAGTTCCACAGAATTGCTTACGTGTACTTTCTCATAATTGCCATTCTCAATCAGCTTCCTCAGCTAGCAGTTTTTGGAAGAGCTGTTTCGATCTTGCCACTGTCCTTTGTGCTGTTTGTCACAGCTGTGAAGGATGCGTATGAGGATTGGAGAAGGCACAGGAGTGATAAAGTTGAGAACAATAGGTTGGCATCGGTTTTGGTTGATGGAAACTTTTTGGAGAAGAGTTGGAGGGATATTAGAGTTGGTGAGGTGATAAAGATCAAGGCAAATGAACCCATCCCCTGTGATATTGTGTTGCTCTCAACCAGTGATCCAACTGGGGTTGCATACGTGCAGACTATTAATCTAGATGGGGAGTCAAATTTGAAGACAAGGTATGCAAAGCAAGAGACGCATGGTAAGGAGGGGTTTGGTGGGGTGATCAAGTGTGAGAAACCCAATAGGAACATATATGGATTTCTGGCTAACATGGAAGTTGATGGCAAGAAGTTATCACTTGGATCCTCCAACATTGTGCTTCGTGGATGTGAGCTCAAGAATACTAGTTGGGCCATTGGTGTTGCTGCATATTGTGGGAGTGAGACCAAGGCTATGTTGAACAGCTCAGGAGCTCCTTCTAAGAGGAGCAGATTGGAGACACGAATGAATTTTGAGATCATTTGGCTCTCTGTCTTCCTCGTGGCATTGTGTACAATCACCTCAGTTTGTGCTGCTGTGTGGTTGAAGCGGCACAAGGATGAGTTGAATCTGTTGCCATATTATAGGAAACTAGACTTTTCAGAAGAGGGGGAAGTGGAAAGCTACGAGTACTATGGATGGGGGTTGGAAGTTCTCTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATTCCCATTTCCTTGTACATTTCCATGGAGCTTGTGAGGGTTGGTCAGGCCTTCTTCATGATCCGAGACAACAGAATGTATGATGAGGAAACAAAGTCAAGGTTTCAGTGCAGAGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAGTATGTTTTCTCGGATAAAACTGGCACACTAACTCAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTACAGTTCTACAGAGAACGGCATGGAGGGTGATCAAGTTGAACATTCTGTGGAAGTGGATGGAAAGGTCTTCAGACCAAAGATGAAGGTGAAAGTTAATCCAGAACTTTTGCAGCTAGCAAGAAGTGGATTTCTCAATTTGGAGGGAAAACGGATTCATGATTTCTTTCTAGCACTGGCAACCTGCAACACTATTGTGCCTATTGTTGTTGACTCGCCTGACCCTGATGTCAAACTGATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCTTATGCTGCTGCAGCCTACGGTTTTATGCTAATAGAACGAACGTCGGGCCATATAGTCATCGATATTCATGGAAAAAGACAAAAGTTCAATGTCTTGGGTTTGCATGAGTTTGACAGTGACAGGAAGAGGATGTCAGTCATATTGGGGTACCCTGACAATTCTGTGAAAGTGTTTGTCAAAGGAGCAGACACATCCATGCTTAATGTGATAGACAAGTCATTTAGCATGCACTTAGTAAGAGCCACGGAAGCACATCTTCACTCTTATTCTTCCATTGGTCTGAGGACACTTGTTATTGGAATGAGAGACTTGAATACTTCAGAATTTGAGCAATGGCATGCATCCTTCGAGGCTGCAAGCACTGCTGTTTTTGGCAGGGCTGCTATGCTCCGCAAGGTTTCTAGCATTGTAGAGAACAGTCTCAGTATATTAGGAGCATCTGCCATTGAAGATAAACTGCAACAAGGTGTGCCTGAATCCATTGAGTCTCTAAGGATTGCAGGGATTAAAGTGTGGGTTCTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGCTACTCCTCAAAGCTCCTTACAAGCAAAATGAATCAGATTATAATCAACAGCAACAACAGAGCAGCATGCAGAAAAAGTTTGCAAGATGCCCTTGTCATGTCTAAAAAGCTCATGTCCACATCTAGCGTTGCCAACAATTCTGGAGGAGGTTCAGAGGCAAATCCAATAGCCTTGATCATTGATGGTACCAGTCTTGTGCATATTCTTGACAGTGAACTTGAAGAAGAGCTATTTCAACTTGCAAGTAGATGTTCTGTTGTTCTATGTTGCCGAGTTGCTCCACTGCAAAAGGCTGGCATTGTTGCCCTTGTGAAGAATAGGACATCAGACATGACTCTAGCCATTGGAGACGGTGCCAATGATGTCTCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTCGGCAAGCAGTAATGGCATCTGATTTTGCAATGGGGCAGTTTAGGTTTTTGGTTCCTCTCTTACTGATACATGGACACTGGAATTACCAACGACTTGGTTACATGATTCTATACAATTTTTACAGAAACGCTGTCCTTGTTCTAGTCTTATTTTGGTATGTGCTCTACACTGCTTTCACTTTGACAACTGCCATAAATGAATGGAGCACGACGTTGTACTCAATAATCTACAGCTCATTACCAACTATAGTTGTTGCTATTCTAGACAAGGATCTCGGTAAAAGGACACTCCTAAAGTACCCTCAACTTTATGGGGCAGGTCAGAGACATGAGGCCTACAACAAGAAACTGTTTGCCTTGACAATGTTAGATACTTTGTGGCAAAGCATGGTCATTTTCTGGGCACCCCTCTTTGCATATTGGAGCAGCACAGTCGATGTGTCAAGCATTGGAGACCTATGGACTTTTGGGGTTGTTATTTTGGTGAATTTGCACCTGGCCATGGACGTTGTAAGGTGGTATTGGGTGACCCATGTTGCCATTTGGGGTTCTATTGTTGCAACTTTCATTAGTGTCATGATCATTGAGGCTTTTCCCAATCTTCCTGGCTACTGGGCCTTCTTTAATGCTGCAGGAACTGGATTGTTCTGGTTATTGTTGCTTGGAATCATAATAGCAGCATTGCTTCCACGTTTGGTTGTAAAATATGTTTATGAATATTATTTTCCCAATGATATTCAGATTTGTAGAGAAGCTGAGAAGATTGAGTATGAGAGAGTTGTTGAAAGTGCAGCAATAGAGATGCTTCCTATCTCAAACATTCCACCAAGATAA 3645 0.4335 MGSKRPHVIMTPSTAAPDNYQLDPFSVNIPEQPTSNSSFGNVFNPFENSLVSSSSRRSSMSNRSSGSKSNNSIHEVSLSGSASKSIPVRYGSKGADSEGLSVSQRELRDEDARLVYINDPLKTNETFLFAGNSIRTSKYSLLSFIPRNLFEQFHRIAYVYFLIIAILNQLPQLAVFGRAVSILPLSFVLFVTAVKDAYEDWRRHRSDKVENNRLASVLVDGNFLEKSWRDIRVGEVIKIKANEPIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETHGKEGFGGVIKCEKPNRNIYGFLANMEVDGKKLSLGSSNIVLRGCELKNTSWAIGVAAYCGSETKAMLNSSGAPSKRSRLETRMNFEIIWLSVFLVALCTITSVCAAVWLKRHKDELNLLPYYRKLDFSEEGEVESYEYYGWGLEVLFTFLMSVIVFQVMIPISLYISMELVRVGQAFFMIRDNRMYDEETKSRFQCRALNINEDLGQIKYVFSDKTGTLTQNKMEFQCASIWGVDYSSTENGMEGDQVEHSVEVDGKVFRPKMKVKVNPELLQLARSGFLNLEGKRIHDFFLALATCNTIVPIVVDSPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGKRQKFNVLGLHEFDSDRKRMSVILGYPDNSVKVFVKGADTSMLNVIDKSFSMHLVRATEAHLHSYSSIGLRTLVIGMRDLNTSEFEQWHASFEAASTAVFGRAAMLRKVSSIVENSLSILGASAIEDKLQQGVPESIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTSKMNQIIINSNNRAACRKSLQDALVMSKKLMSTSSVANNSGGGSEANPIALIIDGTSLVHILDSELEEELFQLASRCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLYTAFTLTTAINEWSTTLYSIIYSSLPTIVVAILDKDLGKRTLLKYPQLYGAGQRHEAYNKKLFALTMLDTLWQSMVIFWAPLFAYWSSTVDVSSIGDLWTFGVVILVNLHLAMDVVRWYWVTHVAIWGSIVATFISVMIIEAFPNLPGYWAFFNAAGTGLFWLLLLGIIIAALLPRLVVKYVYEYYFPNDIQICREAEKIEYERVVESAAIEMLPISNIPPR* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2627 1214 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 18 1214 - -
Vra5g2627 1214 MobiDBLite consensus disorder prediction 14 41 - -
Vra5g2627 1214 Gene3D - 601 732 IPR023299 GO:0000166
Vra5g2627 1214 Pfam Phospholipid-translocating P-type ATPase C-terminal 941 1181 IPR032630 -
Vra5g2627 1214 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Vra5g2627 1214 PRINTS P-type cation-transporting ATPase superfamily signature 913 932 - -
Vra5g2627 1214 SFLD p-type atpase 480 964 IPR044492 -
Vra5g2627 1214 Gene3D - 184 352 - -
Vra5g2627 1214 Gene3D - 475 492 - -
Vra5g2627 1214 MobiDBLite consensus disorder prediction 1 41 - -
Vra5g2627 1214 Pfam Cation transport ATPase (P-type) 591 679 - -
Vra5g2627 1214 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 884 999 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g2627 1214 Gene3D - 493 505 IPR023214 -
Vra5g2627 1214 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Vra5g2627 1214 Pfam Phospholipid-translocating ATPase N-terminal 115 181 IPR032631 -
Vra5g2627 1214 SUPERFAMILY HAD-like 491 968 IPR036412 -
Vra5g2627 1214 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 18 1214 - -
Vra5g2627 1214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 766 IPR023299 GO:0000166
Vra5g2627 1214 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 1180 IPR023298 -
Vra5g2627 1214 SUPERFAMILY Calcium ATPase, transduction domain A 212 349 IPR008250 -
Vra5g2627 1214 Gene3D - 506 516 IPR023299 GO:0000166
Vra5g2627 1214 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 129 1188 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra5g2627 1214 MobiDBLite consensus disorder prediction 53 80 - -
Vra5g2627 1214 Gene3D - 752 953 IPR023214 -
Vra5g2627 1214 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Vra5g2627 1214 PRINTS Sodium/potassium-transporting ATPase signature 990 1010 - -
Vra5g2627 1214 CDD P-type_ATPase_APLT_Dnf-like 131 1073 - -
Vra5g2627 1214 SFLD Haloacid Dehalogenase 480 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2627 Vra-Chr5 33022084 33027602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2627 60 1214 Primary Pumps ATPases AT5G04930 67.558 0.0 1662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2627 K14802 - gmx:100813982 2052.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2627 5 33022084 33027602 Vra5g2627 5 33022084 33027602 ECH