Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2623 ATGTTCAAATCCTACGGGAAAGTTGATGAGCATGAGCAAATGGTGTTGGAAGGAAGGAAGAAAACCAGAAAGAGAATCACAATCATAGGATTGTCCTCGATAGTTTTAGCAGCCGTTGTTTTTGCTGCTGTGTTTGGCATTCATGGCACCAACTCTTCAGAAGGTGCCAATGATGCTCACCCTGTGACAGATTCAGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGATTCGTGCTACAGCAGCCTTGCTTCTGCTGTGAACTCTAACCAGGTTCAGCCTCAGGAGTTGTTTGTGCTGTCAAAGAAGGTGGCCTTATCTGAAGTGTCCAAAGCTCTTGAATATTTCAGTGATCATGATCATGGAGCTTTCAAAGGGGTGGTTGTGAAGAATAGAAGGACCAAGGAGGCTATGAAAAATTGCAGGGAGCTTTTGGGTCTTGCGGTTGATCATCTGAATAGCTCTTTGACATCAGGGGAAAACTTTTCTCTTCTTGAAGATTTTGAGGATCTTCAAACATGGTTAAGTGCTGCAGGTACATATCTGCATACTTGTATCGAAGGCTTTGAAGATGAAAGAGAAGCAATTAAGAAAAGTGTAGTAAGCTATCTTAAAAATTCTACACAGTTCACCAGTAACAGTCTTGCCATAGTTACCTGGATCAACAAGGCTACAACCAAACTGAACCTTAGGCGCTTACTGAGTTTACCTCATCACAATGAAGCACCAGCATGGCTTCCTTCAAAAGATAGGAGGCTCCTTCTGACAGAGGATTTGAGGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTGATAAGAGCAACAAGAGGACTGTGATCTATGTGAAAAAAGGGATTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTACTATTGTATCTGCCAACCTTAATTTTGTGGATGGCACACCAACTTTTTCAACAGCAACATTTGCTGTATTTGGAAGGAATTTCATTGCTAGAGATATGGGTTTTAGGAACAGTGCTGGTCCACAGAAGCATCAAGCAGTAGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGCCACATTGATGCATATCAGGATACTCTCTATGCTCATTCCAACCGTCAATTCTACAGAGAATGTAACATCTATGGCACGGTTGATTTCATCTTTGGCAATTCTGCAGTTGTGATCCAAAACTGTAATATTAGGCCAAAGTTACCAATGCATGGTCAGCAAAACACAATCACAGCTCAGGGAAAAACTGACCCTAACATGAACACTGGGATTTCCATTCAGAACTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTGGAGACATATCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAGGTTTTGTGAACCCAAAAGGCTGGTTACCATGGACAGGGAACTCAGCTCCAGATACCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTGAAGTGGAAGGGTTTGAGAACCATTACTAGTGAACAAGCCAGAAAGTTTACTATCAAAGGTTTTCTACAGGGAGACAAATGGATTTCTGCAGCAGGTGCCCCATTTAAGTCTGATCTATGA 1713 0.4156 MFKSYGKVDEHEQMVLEGRKKTRKRITIIGLSSIVLAAVVFAAVFGIHGTNSSEGANDAHPVTDSVKAVCDVTLYKDSCYSSLASAVNSNQVQPQELFVLSKKVALSEVSKALEYFSDHDHGAFKGVVVKNRRTKEAMKNCRELLGLAVDHLNSSLTSGENFSLLEDFEDLQTWLSAAGTYLHTCIEGFEDEREAIKKSVVSYLKNSTQFTSNSLAIVTWINKATTKLNLRRLLSLPHHNEAPAWLPSKDRRLLLTEDLRKKADIVVAKDGSGKYKKISDALKHVPDKSNKRTVIYVKKGIYYENVRVEKTKWNVMMIGDGMTSTIVSANLNFVDGTPTFSTATFAVFGRNFIARDMGFRNSAGPQKHQAVALMTSADQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVETYLGRPWKNYSTTVYMKSRMEGFVNPKGWLPWTGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSEQARKFTIKGFLQGDKWISAAGAPFKSDL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2623 570 Pfam Pectinesterase 264 556 IPR000070 GO:0030599|GO:0042545
Vra5g2623 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 222 IPR035513 -
Vra5g2623 570 Pfam Plant invertase/pectin methylesterase inhibitor 65 217 IPR006501 GO:0004857
Vra5g2623 570 Gene3D - 259 570 IPR012334 -
Vra5g2623 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 39 221 IPR006501 GO:0004857
Vra5g2623 570 PANTHER PECTINESTERASE 4 568 - -
Vra5g2623 570 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Vra5g2623 570 PANTHER PECTINESTERASE 4 568 - -
Vra5g2623 570 CDD PMEI-like_3 68 223 - -
Vra5g2623 570 SUPERFAMILY Pectin lyase-like 262 567 IPR011050 -
Vra5g2623 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 221 IPR035513 -
Vra5g2623 570 SMART PMEI_2 61 217 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2623 Vra-Chr5 32995784 32998260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2623 1 570 Carbohydrate Esterase AT3G10710 56.076 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2623 - - gmx:100811152 986.867