Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2622 ATGTCATCCCCACCATTTTTCCTTCTCTTTCTCTTCTTCCTCTCAGCTCCATTATTACTCTTAGCTCAATCTCCACCTTCTCCACCTTCTCCTTCCTCTTCTCTTGCCTGCAAAACCACACTCTATCCAAAACTATGTCGTTCCATTCTCTCAGCCATCCGTGCCTCCCCTTCCGACCCTTACGGCTATGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTCGCCAAGGTCTTTGAGGACTTCCTCCATCGCCACCAATCATCTTCTTCCCTCAAACATGCAGAAGTTGCATCTCTAGGAGACTGCAAAGACCTCAACCAGCTCAACGTAGACTACTTAACGTCCGTATCCGAAGAGCTCAAATCTGTGAGCTCTTCAGATACCGAGCTGGTTGAGAAAATCGAAAGCTATCTCAGTGCTGTTGCCACCAACCACTACACATGCTATGATGGGTTGGTGGTTACCAAAAGCAACATTGCCAACGCCCTTGCCGTGCCACTGAAGGATGTGACCCAGTTCTACAGTGTCTCACTTGGGTTGGTCACCGAGGCTCTCGACAAGAACCTCAGAAGAAACAAGACACGCAAACATGGACTACCCACCAAAACCTTCAAGGTCAGGCAACCATTGGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCACCAAGTTATCCAATTGCAGCAGAGCTGGAAGGAATCTTAAGGAAAGTGGAAGCCAAGGAATTTTATTACAGGATTTTGTGATTGTGAGTTCTTATGGAATGGACAACTATACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAGATGGATATTTCCTGGTGTATGTTAGAGAGGGAATCTATGAGGAATATGTGGTAATTCCCAGAGAAAAGAAGAACATATTGCTTGTTGGAGATGGCATTAACAAGACTATCATCACAGGGAACCACAGTGTCATAGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTTCAGGAGAAAGGTTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCAGAAAAACACCAAGCAGTGGCAGTGAGGAACAATGCTGACCTCTCTACATTCTACCGTTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTTCACTCTCTGAGGCAATTCTACAGGGAATGTGAAATCTATGGCACTGTGGACTTCATTTTTGGCAACGCAGCCGTGGTGTTCCAACAGAGTAAGATCTATGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTTTTCAGACCACTGGAATTTCAATCCAAAACTGCACCATTGATGCCGCACCAGACTTAGCTGCGGACTTGAATTCCACAGCAAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGGACTGTTTACCTGCAATCATACATTGGAAACGTTATTCAACCTGCAGGGTGGTTAGAGTGGAATGGCACAGTTGGTTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGTCCTGGTTCTAACACTAGCAATAGAGTACAATGGCCTGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTGAACTTTACGTTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTGTTAAGATAA 1707 0.4476 MSSPPFFLLFLFFLSAPLLLLAQSPPSPPSPSSSLACKTTLYPKLCRSILSAIRASPSDPYGYGKFSIKQSLKQARKLAKVFEDFLHRHQSSSSLKHAEVASLGDCKDLNQLNVDYLTSVSEELKSVSSSDTELVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQFYSVSLGLVTEALDKNLRRNKTRKHGLPTKTFKVRQPLEKLIKLLRTKYSCTKLSNCSRAGRNLKESGSQGILLQDFVIVSSYGMDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGIYEEYVVIPREKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECEIYGTVDFIFGNAAVVFQQSKIYARKPLPNQKNAVTAQGRTDPFQTTGISIQNCTIDAAPDLAADLNSTASYLGRPWKLYSRTVYLQSYIGNVIQPAGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2622 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Vra5g2622 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Vra5g2622 568 SMART PMEI_2 28 184 IPR006501 GO:0004857
Vra5g2622 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 186 IPR006501 GO:0004857
Vra5g2622 568 SUPERFAMILY Pectin lyase-like 252 565 IPR011050 -
Vra5g2622 568 CDD PMEI-like_3 35 187 - -
Vra5g2622 568 Gene3D - 252 568 IPR012334 -
Vra5g2622 568 PANTHER PECTINESTERASE 7 566 - -
Vra5g2622 568 Pfam Pectinesterase 254 551 IPR000070 GO:0030599|GO:0042545
Vra5g2622 568 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Vra5g2622 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Vra5g2622 568 PANTHER PECTINESTERASE 7 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2622 Vra-Chr5 32990798 32995688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2622 8 567 Carbohydrate Esterase AT3G10720 57.166 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2622 K01051 - gmx:100816503 1010.75