Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2621 ATGGATATAGATCTCCGGTTACCTTCTGGTGAACATGATAAGGAGGATGAAGAAACAACTACAATTGATAACATGCTGGACAGTGAAGAAAAATTGCATAATGGAGGTATAGATGGCAGAAATATAGTTGATGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATTTGAATTCACCCACAGTTGATATTGTAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTTTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGTCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCTTGCTCTAGATATGGAACAAAACGAGAGTATGACAAATCATTTAATCGACCACGTGCTCGACAGAACAAACAAGATTCTGAAAATTCAACAGGTCGAAGATCTTGCTCTAAAACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGTCAGATGGAAAGTGGGTTATACATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTTAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCTAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAGAATCCATTTGATAAAGGTCGGAATTTGGGCCTGGAGTCAGGGGAGGCTAAGCTCATGCTTGATTTTTTCATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAAGATCAACGTCTGAAAAATCTTTTATGGATTGATGCTAAAAGTAGGCATGACTATATCAACTTTTGTGATGTAGTGTCATTTGACACCACGTATGTTAGAAACAAATATAAAATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCATTACCAATTTACATTACTTGGATGTGCCTTGATATCAGATGAAAGTGCTGCCACTTTTTCTTGGCTATTTCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATCATTACTGACCATGACAAGACATTGAAGTCAGTTATTTCAGACATCTTTCCTAATTCTAGTCATTGTGTTTGCCTATGGCATGTATTAGGGAAGGTATCAGAAAATTTAGCTCCTGTAATTAAAAAGCATGAGAATTTTATGGCAAAATTTGAAAAATGCATTTATCGGTCCTTGACCAGTGATGATTTTGAGAGGAGATGGTGGAAAATTGTTGATAAGTTTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGAAAGTTATGGGCACCAACATTCATGAAAGATGTTTTCTTAGGTGGTATGTCTACTGTCCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTCCAAGACTTTGTCAAACAGTATGAATCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAATTGGCAACTTTAAAAACTCCTTCACCCTTGGAGAAGAGTGTTGCAGGGACTTTCACTCATGCTGTATTCAAGAAAATTCAAGCTGAGGTTGTAGGTGCAGTTGCCTGTCATCCTAAAGCTGACAGACAGGATGATACAACCACAGTTCACAGGGTTCATGACATGGAAACAAGTAAAGACTTTTTTGTTGTGGTGAATCAAGTGAAGTTCGAGTTGTCTTGTATATGTAGGTTATTTGAATACAGAGGTTATCTTTGTAGACATGCATTGATTGTTCTTCAATATTCTGGACAGTCAGTGTTCCCGCCTCAATATATTTTGAAACGGTGGACAAAAGATGCAAAGCTCAGGAATATAATTGGAGAAGAATCTGAACACATGCTAACTAGGGTGCAACGGTACAATGATTTATGTCAGCGAGCACTGAAGCTTAGTGAAGAGGGATCATTGTCCCAAGAGAGTTATAGTATTGCATTCCATGCACTACATGAAGCACACAAAAGTTGTGTGAGTGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCACTGAAGAAGATACACAAAGTAGAAATATAGGCAAGCCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCTGAAGCAGAAGTGATGACAGTTGGTGCCCTAGACAACTTGCAACAAATGGAAAAATTCAGCTCAAGAGCAGCAGTAACCCTTGAAGGTTATTATGGTACACAACAGAGCGTGCAAGGAATGTTGAACTTAATGGGACCAACTCGTGATGATTACTATGGGAATCAACAGACTCTTCAGGGGCTGGGACCAATAAGTTCAATACCAACCAGTCACGATGGTTACTATGGTGCACATCAGGGCATTTCTGGTCTGGCACAACTAGATTTTTTGCGAACTGGCTTCACATATAGCATTCGGGATGATCCTAACGTGAGAGCAACACAGTTGCATGAGGATCCATCAAGACATGCATAA 2532 0.389 MDIDLRLPSGEHDKEDEETTTIDNMLDSEEKLHNGGIDGRNIVDAGIEVHALNGGDLNSPTVDIVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYINFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFTLLGCALISDESAATFSWLFRTWLKGVGGQVPKVIITDHDKTLKSVISDIFPNSSHCVCLWHVLGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDDFERRWWKIVDKFELREDECMQSLYEDRKLWAPTFMKDVFLGGMSTVQRSESVNSFFDKYVHKKTSVQDFVKQYESILQDRYEEEAKADSDTWNKLATLKTPSPLEKSVAGTFTHAVFKKIQAEVVGAVACHPKADRQDDTTTVHRVHDMETSKDFFVVVNQVKFELSCICRLFEYRGYLCRHALIVLQYSGQSVFPPQYILKRWTKDAKLRNIIGEESEHMLTRVQRYNDLCQRALKLSEEGSLSQESYSIAFHALHEAHKSCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNIGKPNKKKNPTKKKKVNSEAEVMTVGALDNLQQMEKFSSRAAVTLEGYYGTQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQGISGLAQLDFLRTGFTYSIRDDPNVRATQLHEDPSRHA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2621 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Vra5g2621 843 MobiDBLite consensus disorder prediction 132 164 - -
Vra5g2621 843 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 47 778 - -
Vra5g2621 843 Pfam MULE transposase domain 288 380 IPR018289 -
Vra5g2621 843 MobiDBLite consensus disorder prediction 678 706 - -
Vra5g2621 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 778 IPR031052 GO:0006355
Vra5g2621 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Vra5g2621 843 MobiDBLite consensus disorder prediction 678 726 - -
Vra5g2621 843 Pfam SWIM zinc finger 576 602 IPR007527 GO:0008270
Vra5g2621 843 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2621 Vra-Chr5 32966940 32975344 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra5g2621 FAR1 2.3e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2621 - - gmx:100817034 1638.24