Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2620 ATGGAATCCAAAGATGGTGATGATAAGAATGAAAAACATTTACAACAACACCCTTTGGTGAAAGGAGGAGTTGTTGTTGAAGCATCTTCTACTCTTGTTAATCCTCAACAAGCACAATACCAGATTCCACAAGGTTTAATGGAGATTTACATGACTGGCCAGAATATAGCACAATCGTTACACACACAAGATAATGTTACATCAGATGAACATGGTAGAAAACGAGGCACATCACAAGATAAGGCCTTTGAGAAAAGACAAAAGAGAATGATTAAGAATAGAGAATCTGCTGCACGTTCTAGAGCAAGAAAACAAGCTTACACAACTGAATTGGAGCACAAAGTCTCTCGTCTGGAAGAAGAAAATCAAAAGCTCAGGAGACAAAAGGAGATAGAAGATATATCGTCGATTATGCCACCTCAAAAACCAAGATACCAGATTCGTCGAACTAAATCAGCTTGGTTTTGA 468 0.3803 MESKDGDDKNEKHLQQHPLVKGGVVVEASSTLVNPQQAQYQIPQGLMEIYMTGQNIAQSLHTQDNVTSDEHGRKRGTSQDKAFEKRQKRMIKNRESAARSRARKQAYTTELEHKVSRLEEENQKLRRQKEIEDISSIMPPQKPRYQIRRTKSAWF* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2620 155 MobiDBLite consensus disorder prediction 66 110 - -
Vra5g2620 155 MobiDBLite consensus disorder prediction 1 16 - -
Vra5g2620 155 MobiDBLite consensus disorder prediction 61 110 - -
Vra5g2620 155 Gene3D - 83 137 - -
Vra5g2620 155 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 83 128 IPR004827 GO:0003700|GO:0006355
Vra5g2620 155 SUPERFAMILY Leucine zipper domain 85 130 IPR046347 GO:0003700|GO:0006355
Vra5g2620 155 SMART brlzneu 81 153 IPR004827 GO:0003700|GO:0006355
Vra5g2620 155 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 88 103 IPR004827 GO:0003700|GO:0006355
Vra5g2620 155 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g2620 155 Pfam bZIP transcription factor 85 128 IPR004827 GO:0003700|GO:0006355
Vra5g2620 155 PANTHER BZIP TRANSCRIPTION FACTOR 18 153 - -
Vra5g2620 155 Coils Coil 108 135 - -
Vra5g2620 155 CDD bZIP_plant_BZIP46 85 130 - -
Vra5g2620 155 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 18 153 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2620 Vra-Chr5 32963429 32964608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2620 72 155 bZIP Transcription Factor Family AT3G56850 67.816 1.40e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra5g2620 bZIP_1 6e-15 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2620 K14432 - vra:106760633 310.457