Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2617 ATGGGTTCGCTTGAAACCCCAACCGGCGGGGAAAACGGTTCCGCTCCTTCCGCCGGCAAAGGCAAATCCATGTCCGTCGACGGCGCGGAGGCGGCGCCGGAGCCCGACATGTCGAAGCGTAGGAGATCGTCGGTTCTCCCCCTGGAGGTCGGCACGCGTGTCATGTGCCGGTGGAGGGACAGCAAGTACCATCCCGTTAAGGTCATCGAACGCCGGAAGGTTCACAACGCCATCCCCAGCGATTACGAGTATTACGTCCATTACACCGAGTTCAATAGAAGGCTTGACGAGTGGGTTAAGCTTGAACAGCTTGATCTTGATTCAGTGGAGGCGGTTGTCGATGAGAAAGTGGAGGAGAAGGGCGCAACTGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATTGATGAGACACATGTAGAGGGTCACGAGGAGCTTGATGCTGCCAGTTTACGAGAACATGAGGAATTTACAAAAGTGAAAAATATAGCTACTATTGAGCTTGGAAGATATGAGATCGAGACATGGTACTTCTCCCCATTCCCTCCAGAATACAATGACTGTTTGAGGCTGTACTTTTGCGAGTTTTGCCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAATGCGATCTGAAGCATCCTCCTGGTGATGAGATATATAGAAGTGGCACACTGTCAATGTTTGAGGTTGATGGAAAGAAGAACAAGGTTTATGGGCAGAATCTTTGTTACTTGGCCAAGTTATTTCTTGATCACAAGACACTCTATTATGACGTAGATCTGTTTCTGTTTTATGTTTTGTGTGAATGTGATGATCGAGGTTGTCACATGGTTGGCTATTTTTCGAAGGAAAAACATTCCGAGGAATCTTACAATTTGGCATGTATCCTCACCCTTCCACCTTACCAAAGGAAAGGCTATGGCAAATTTCTAATTGCTTTCTCATATGAACTGTCGAAGAAGGAGAGCAAAGTTGGGACACCTGAAAGACCCCTATCAGATCTTGGACTGCTAAGCTACAGAGGATATTGGACCAGGGTTCTCTTGGACATTCTGAAGAAGCACAAGGGGAACATTTCTATCAAGGAACTGAGTGATATGACTGCCATTAAAGCTGAAGATATATTAACAACCCTGCAGAGTCTAGAATTGATTCAATACAGGAAAGGTCAACATGTGATCTGTGCTGATCCCAAAGTGTTGGATCGTCATCTTAAAGCTGCTGGAAGGGGAGGCCTGGATGTTGATGTTAGCAAATTGATCTGGACTCCTTATAAAGAACAGAGTTGA 1305 0.4621 MGSLETPTGGENGSAPSAGKGKSMSVDGAEAAPEPDMSKRRRSSVLPLEVGTRVMCRWRDSKYHPVKVIERRKVHNAIPSDYEYYVHYTEFNRRLDEWVKLEQLDLDSVEAVVDEKVEEKGATGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLRLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKESKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2617 434 Gene3D - 337 417 IPR036388 -
Vra5g2617 434 Pfam RNA binding activity-knot of a chromodomain 48 106 IPR025995 -
Vra5g2617 434 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 26 434 - -
Vra5g2617 434 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 159 430 IPR016181 -
Vra5g2617 434 SMART chromo_7 62 121 IPR000953 -
Vra5g2617 434 CDD NAT_SF 270 326 - -
Vra5g2617 434 Pfam MYST family zinc finger domain 160 214 IPR040706 -
Vra5g2617 434 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 158 429 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vra5g2617 434 Pfam MOZ/SAS family 219 396 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vra5g2617 434 MobiDBLite consensus disorder prediction 1 44 - -
Vra5g2617 434 CDD CBD_MOF_like 51 120 - -
Vra5g2617 434 Gene3D - 159 215 - -
Vra5g2617 434 Gene3D - 37 158 - -
Vra5g2617 434 PANTHER HISTONE ACETYLTRANSFERASE 26 434 - -
Vra5g2617 434 Gene3D - 217 429 - -
Vra5g2617 434 SUPERFAMILY Chromo domain-like 42 159 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2617 Vra-Chr5 32945828 32951743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2617 4 434 C2H2 Transcription Factor Family AT5G64610 86.175 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2617 K11308 - gmx:100819168 857.055